Genome-wide transcriptome analyses of developing seeds from low and normal phytic acid soybean lines

ABSTRACT: Purpose: Comprehensive comparison of gene-expression profiles between 3mlpa (mutant with low phytic acid) and 3MWT (non-mutant with normal phyic acid) soybean lines (Glycine max) at five stages of seed development using RNA-Seq approaches. Methods: mRNA sequencing reads (101SE) were generated in triplicate from five seed developmental stages of 3mlpa and 3MWT soybean line using Illumina HiSeq 2000. Results: A total of 4235 differentially expressed genes, including 512-transcription factor genes were identified. Eighteen biological processes such as apoptosis, glucan metabolism, cellular transport, photosynthesis and 9 transcription factor families including WRKY, CAMTA3 and SNF2 were enriched during seed development. Genes associated with apoptosis, glucan metabolism, and cellular transpor

ORGANISM(S): Glycine max

SUBMITTER: M.A. Saghai Maroof 

PROVIDER: E-GEOD-75575 | biostudies-arrayexpress |

REPOSITORIES: biostudies-arrayexpress