Multiple Origins of Virus Persistence during Natural Control of HIV Infection

ABSTRACT: Targeted HIV cure strategies require definition of the mechanisms that maintain the virus. Here, we tracked HIV replication and the persistence of infected CD4 T cells in individuals with natural virologic control by sequencing viruses, T cell receptor genes, HIV integration sites and cellular transcriptomes. Our results revealed three mechanisms of HIV persistence operating within distinct anatomic and functional compartments. In lymph node, we detected viruses with genetic and transcriptional attributes of active replication in both T follicular helper (TFH) cells and non-TFH memory cells. In blood, we detected inducible proviruses of archival origin among highly differentiated, clonally expanded cells. Linking the lymph node and blood was a small population of circulating cells harborin

ORGANISM(S): Homo sapiens

SUBMITTER: Jianfei Hu 

PROVIDER: E-GEOD-83482 | biostudies-arrayexpress |

REPOSITORIES: biostudies-arrayexpress