Metabolomics,Unknown,Transcriptomics,Genomics,Proteomics

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Intra- and inter-individual genetic differences in gene expression


ABSTRACT: Each expressed gene was tested for differential expression in three mouse tissues (Brain, Kidney, Liver) in a direct comparison of SJL/J vs. C57BL/6J Keywords: direct comparison, multiple tissues Whole RNA from a pool of 5 SJL/J mice was compared to a pool of RNA from C57BL/6J mice with three technical replicates per tissue, no dye swaps.

ORGANISM(S): Mus musculus

SUBMITTER: Peter Little 

PROVIDER: E-GEOD-8358 | biostudies-arrayexpress |

REPOSITORIES: biostudies-arrayexpress

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Publications

Intra- and inter-individual genetic differences in gene expression.

Cowley Mark J MJ   Cotsapas Chris J CJ   Williams Rohan B H RB   Chan Eva K F EK   Pulvers Jeremy N JN   Liu Michael Y MY   Luo Oscar J OJ   Nott David J DJ   Little Peter F R PF  

Mammalian genome : official journal of the International Mammalian Genome Society 20090508 5


Genetic variation is known to influence the amount of mRNA produced by a gene. Because molecular machines control mRNA levels of multiple genes, we expect genetic variation in components of these machines would influence multiple genes in a similar fashion. We show that this assumption is correct by using correlation of mRNA levels measured from multiple tissues in mouse strain panels to detect shared genetic influences. These correlating groups of genes (CGGs) have collective properties that on  ...[more]

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