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Metabolomics,Unknown,Transcriptomics,Genomics,Proteomics

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Schistosoma-pulmonary hypertension sorted macrophage gene expression

ABSTRACT: Alveolar and tissue macrophages were sorted from Schistosoma-exposed and unexposed mice. The mice were C57Bl6/J background. Schistosoma mansoni exposure was intraperitoneal sensitization and intravenous challenge with purified eggs (see Kumar et al. Am J Respir Crit Care Med. 2015;192(8):998-1008. doi: 10.1164/rccm.201410-1820OC. PMID: 26192556). Samples were pooled from N=5 animals per group. Cell sorting was performed on day 3 after IV challenge. Alveolar macrophages were identified as CD45+F4/80+CD11c+SiglecF+. Tissue macrophages were identified as CD45+F4/80+CD11b+SSClow. The RNA library was prepared using a Kappa Stranded mRNA-Seq kit. RNA sequencing was performed on an Ion Proton platform. Expression analysis was performed using Tophat-Bowtie-Cufflinks with Galaxy online.

ORGANISM(S): Mus musculus

SUBMITTER: Brian Graham

PROVIDER: E-GEOD-84651 | biostudies-arrayexpress |

REPOSITORIES: biostudies-arrayexpress

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