Browse
Submit Data
Databases
API
Help

Metabolomics,Unknown,Transcriptomics,Genomics,Proteomics

Dataset Information

9 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Transcription profiling of immune response related tissues in chickens

ABSTRACT: Comparison of the chicken transcriptome of different immune-related tissues

INSTRUMENT(S): GenePix Personal 4100A [Axon Instruments]

ORGANISM(S): Gallus gallus

SUBMITTER: Thomas Ruby

PROVIDER: E-MEXP-1161 | biostudies-arrayexpress |

REPOSITORIES: biostudies-arrayexpress

ACCESS DATA

Json Xml

Similar Datasets

Transcription profiling of bursa of Fabricius from genetically resistant and susceptible chickens infected with Infectious Bursal Disease Virus (IBDV)

Project description:We used a chicken immune-targeted gene array to analyse the differences in gene expression in the bursa of Fabricius from genetically resistant and susceptible animals infected with Infectious Bursal Disease Virus (IBDV).

2006-10-19 | E-MEXP-756 | biostudies-arrayexpress

Transcription profiling of talon-citrus clementina fruit flesh development

Project description:Global analysis of gene expression during development and ripening of citrus fruit flesh. Samples taken from fruit development phases I,II and III (Bain JM, 1958, Aust J Bot, 6: 1-24 ) were compared

2006-09-21 | E-MEXP-435 | biostudies-arrayexpress

Transcription profiling of human breast carcinoma cells before and after snail induction to study the epithelial to mesenchymal cell phenotype conversion

Project description:We have applied our research on a well-documented biological model, the epithelial cell evasion mediated by the ectopic expression of the snail protein. Indeed, ectopic expression of Snail, a transcriptional repressor, is widely used to study the initial step of epithelial cell evasion also called Epithelial to Mesenchymal Transition (EMT). During this process, cells loose their intercellular junctions and acquired motility and an invasive behaviour. In order to have a temporal view of the gene expression modulation that occurred during EMT, we have established a biological model based on the conditional expression of snail protein in human non-invasive MCF-7 breast carcinoma cells that do not express endogenous snail and exhibit a well-organized epithelial phenotype. 96 hours after snail induction, the epithelial to mesenchymal cell phenotype conversion is completed.

2009-01-06 | E-MEXP-1457 | biostudies-arrayexpress

Transcription profiling of high quality RNA samples from human breast adenocarcinoma MCF-7 cells and human skeletal muscle to evalutate the experimental performance of Actichip microarrays

Project description:To evaluate the experimental performance of Actichip microarrays, a series of 10 repeated hybridisation experiments, including 5 dye swaps, were carried out with optimised target labelling, hybridisation, scanning and data analysis protocols. All the procedures were standardised to limit the impact of experimental bias or biological variations on data. The same series of high quality RNA samples purified from human breast adenocarcinoma MCF-7 cells and from human skeletal muscle was used in our experiments. Epithelial cells and muscle tissue were chosen because they express well-characterised sets of cytoskeleton genes, and were anticipated to give well-contrasted differential expression data when analysed with Actichip.

2007-08-01 | E-MEXP-965 | biostudies-arrayexpress

Transcription profiling of transgenic mice (tTA/IkappaBalpha-AA) treated with doxycycline (DOX), which represses expression of the transgenic IkappaBalpha

Project description:double transgenic mice (tTA/IkappaBalpha-AA) were treated with doxycycline (DOX), which represses expression of the transgenic IkappaBalpha. Double transgenic mice without Dox-treatment overexpress the transdominant IkappaBalpha, which represses NFkappaB activation.

2006-05-10 | E-MEXP-358 | biostudies-arrayexpress

Transcription profiling of petioles and laminar abscission zone enriched tissues from Citrus clementina following ethylene treatment

Project description:Transcription profiling of the ethylene-induced abscission process in laminar abscission zone enriched tissues and petiole of debladed mature citrus leaf explants. Samples taken at 0, 6, 12, 24 and 36h after ethylene treatment (10 ul/l) were compared.

2008-12-31 | E-MEXP-1428 | biostudies-arrayexpress

Transcription profiling of human breast adenocarcinoma cell line MCF-7 transfected by TNF alpha receptor 1 to investigate cytoskeleton gene expression associated with resistance to TNF-alfpha

Project description:We used DNA microarray technology to investigate the cytoskeleton gene expression profile associated with the acquisition of cell resistance to TNF-alpha in breast carcinoma cell line (MCF7) versus sensitive cells (1001).

2009-10-31 | E-MEXP-1927 | biostudies-arrayexpress

Platform comparison and transcription profiling using high quality RNA samples purified from human breast adenocarcinoma MCF-7 cells and human skeletal muscle on the Actichip, Affymetrix U1331 2.0 and an academic 70mer oligochip to validate the Actichip

Project description:To validate Actichip, we compared this microarray with two other well-established oligonucleotide-based platforms. We used 25-mer oligonucleotide commercial chips (Affymetrix, human genome U133A 2.0) and academic arrays prepared with a 70-mer oligonucleotide set (Operon, human whole genome version 2.0). The same series of high quality RNA samples purified from human breast adenocarcinoma MCF-7 cells and from human skeletal muscle was used in our experiments.

2007-06-01 | E-MEXP-968 | biostudies-arrayexpress

Transcription profiling of liver in white leghorn and red junglefowl chicken strains

Project description:Investigating gene expression differences in White leghorn (SLU13) and red junglefowl liver.

2006-03-30 | E-MEXP-589 | biostudies-arrayexpress

Transcription profiling of chicken strain (white leghorn and red junglefowl) hypothalamus and thalamus

Project description:Examination of differential gene expression the hypothalamus and thalamus of White Leghorn and red junglefowl chickens.

2006-02-10 | E-MEXP-458 | biostudies-arrayexpress