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Metabolomics,Unknown,Transcriptomics,Genomics,Proteomics

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Transcription profiling time course of rice germination under anaerobic conditions, aerobic to anaerobic switch and anaerobic to aerobic switch

ABSTRACT: Transcript abundance profiles were examined over the first 24 hours of germination in rice grown under anaerobic conditions. Transcript abundance profiles were also examined for rice grown under aerobic conditions for 24 h and then switched to anaerobic conditions and vice versa.

ORGANISM(S): Oryza sativa

SUBMITTER: Reena Narsai

PROVIDER: E-MEXP-2267 | biostudies-arrayexpress |

REPOSITORIES: biostudies-arrayexpress

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Publications

Defining core metabolic and transcriptomic responses to oxygen availability in rice embryos and young seedlings.

Narsai Reena R Howell Katharine A KA Carroll Adam A Ivanova Aneta A Millar A Harvey AH Whelan James J

Plant physiology 20090701 1

Analysis reveals that there is limited overlap in the sets of transcripts that show significant changes in abundance during anaerobiosis in different plant species. This may be due to the fact that a combination of primary effects, changes due to the presence or absence of oxygen, and secondary effects, responses to primary changes or tissue and developmental responses, are measured together and not differentiated from each other. In order to dissect out these responses, the effect of the presen ...[more]

PMID: 19571305

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