Metabolomics,Unknown,Transcriptomics,Genomics,Proteomics

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Transcription profiling of human dendritic cell maturation revealed by integration of proteome and transcriptome at the pathway level


ABSTRACT: Day 6 human monocyte derived dendritic cells were left unstimulated or matured for 2 days using the golden standard maturation cocktail currently used in clinical practice. Maturation induced changes in mRNA expression were determined by calculation of expression in mature DC relative to immature DC. Obtained gene expression raito's were compared to protein expression ratio's from the same batch of cells at the pathway level (proteomics data of this experiment is deposited in Human Proteinpedia, accession number pending).

ORGANISM(S): Homo sapiens

SUBMITTER: Luca Beltrame 

PROVIDER: E-MEXP-2290 | biostudies-arrayexpress |

REPOSITORIES: biostudies-arrayexpress

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Publications

Dominant processes during human dendritic cell maturation revealed by integration of proteome and transcriptome at the pathway level.

Buschow Sonja I SI   Lasonder Edwin E   van Deutekom Hanneke W M HW   Oud Machteld M MM   Beltrame Luca L   Huynen Martijn A MA   de Vries I Jolanda M IJ   Figdor Carl G CG   Cavalieri Duccio D  

Journal of proteome research 20100401 4


Gene expression is commonly used to study the activation of dendritic cells (DCs) to identify proteins that determine whether these cells induce an immunostimulatory or tolerogenic immune response. RNA expression, however, does not necessarily predict protein abundance and often requires large numbers of experiments for statistical significance. Proteomics provides a direct view on protein expression but is costly and time consuming. Here, we combined a comprehensive quantitative proteome and tr  ...[more]

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