Browse
Submit Data
Databases
API
Help

Metabolomics,Unknown,Transcriptomics,Genomics,Proteomics

Dataset Information

26 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Transcription profiling of yeast with Met4 cofactors deleted at different times after Met4 hyperactivation

ABSTRACT: Each category of Met4 cofactor(s) was systematically deleted and the strains were analyzed for genome-wide transcription at different times following induction of hyperactive Met4.

ORGANISM(S): Saccharomyces cerevisiae

SUBMITTER: Traci Lee

PROVIDER: E-MEXP-2427 | biostudies-arrayexpress |

REPOSITORIES: biostudies-arrayexpress

ACCESS DATA

Json Xml

Similar Datasets

Transcription profiling of yeast strains lacking Met4 or Met4 cofactors at time points after sulfur limitation

Project description:All yeast strains used in this study (Table 1) are in the W303 background (ade2-1 can1-100, his3-1,15 leu2-3,112 trp1-1 ura3). For sulfur limitation microarray studies, WT, met4 delete, met31 delete met32 delete, cbf1 delete, and met28 delete strains were grown in minimal B-media [see Cherest, H., and Surdin-Kerjan, Y. (1992). Genetic analysis of a new mutation conferring cysteine auxotrophy in Saccharomyces cerevisiae: updating of the sulfur metabolism pathway. Genetics 130, p51-58 for B-media composition] supplemented with 0.5mM methionine as the sole sulfur source. An aliquot of cells was harvested for a t=0 time point while the remainder were filtered through a .22um Stericup filter (Millipore), then washed and resuspended in pre-warmed (30 C) B-media lacking any source of sulfur. Cells were harvested after 20, 40, and 80 minutes.

2009-11-30 | E-MEXP-2429 | biostudies-arrayexpress

Met4 hyperactivation timecourse

Project description:The met31 single delete and the met32 single delete strains were analyzed for genome-wide transcription at different times following Met4 hyeractivation and compared to cells that contain both Met31 and Met32.

2011-08-21 | E-MEXP-3301 | biostudies-arrayexpress

90 min Met4 hyperactivation ChIP-chip

Project description:Identification of in vivo binding targets of Met4 and Met32 by conducting chromatin immunoprecipitation studies using genomic tiling arrays (ChIP-on-chip 4X44K whole yeast genome arrays by Agilent) following 90 minutes Met4 hyperactivation.

2012-02-21 | E-MEXP-3302 | biostudies-arrayexpress

Transcription profiling of N. gonorrhoeae nmb1650 knockout mutant and parental strains grown in capnoaerobic conditions

Project description:Comparison of N. gonorrhoeae nmb1650 knockout mutant and wild-type parent strains grown in capnoaerobic conditions (normal atmosphere +5% CO2)

2011-05-01 | E-MEXP-1664 | biostudies-arrayexpress

Transcription profiling of N. meningitidis nmb1650 knockout mutant and parental strains grown in capnoaerobic conditions

Project description:Comparison of N. meningitidis nmb1650 knockout mutant and parental strains grown in capnoaerobic conditions (normal atmosphere +5% CO2)

2010-05-01 | E-MEXP-1666 | biostudies-arrayexpress

Transcription profiling of Drosophila Kc167 cells following 5-48 hr treatment with 20-hydroxyecdysone

Project description:The changes in transcript titers are described for Drosophila Kc167 cells following 5-48 hr treatment with 20-hydroxyecdysone.

2009-05-01 | E-MEXP-1603 | biostudies-arrayexpress

Transcription profiling of N. meningitidis nmb1650 knockout mutant and parental strains grown in anaerobic conditions

Project description:Comparison of N. meningitidis nmb1650 knockout mutant and parental strains grown in anaerobic conditions

2011-05-01 | E-MEXP-1667 | biostudies-arrayexpress

Transcription profiling of N. gonorrhoeae nmb1650 knockout mutant and parental strains grown in anaerobic conditions

Project description:Comparison of N. gonorrhoeae nmb1650 knockout mutant and parental wild-type strains grown in anaerobic conditions

2011-05-01 | E-MEXP-1665 | biostudies-arrayexpress

Transcription profiling of Cryptococcus gattii strains from the Vancouver Island cryptococcosis outbreak reveals differences between high and low virulence isolates

Project description:Comparison of transcriptional profiles of a high (a VGIIa clinical strain, R265) and a low (a VGIIb clinical strain, R272) virulence strain from the Vancouver Island outbreak.

2009-03-01 | E-MEXP-1564 | biostudies-arrayexpress

Transcription profiling of rat heart from a spontaneously hypertensive strain treated with doxorubicin or dexrazoxane and then doxorubicin

Project description:This study was initiated to characterize early DOX-induced changes in cardiac gene expression in order to identify potential additional areas for clinical intervention. Male spontaneously hypertensive rats (SHR) received 3 mg/kg DOX or vehicle (iv) 30 minutes following pretreatment with 50 mg/kg DZR or saline (ip) weekly for 1, 2 or 3 weeks.

2009-06-01 | E-MEXP-2071 | biostudies-arrayexpress

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data