Browse
Submit Data
Databases
API
Help

Metabolomics,Unknown,Transcriptomics,Genomics,Proteomics

Dataset Information

9 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Transcription profiling of human entorhinal cortex cells from suicide patients with major depression.

ABSTRACT: RNAs were extracted from entorhinal cortex of human suicide patients with major depression and matched control subjects. The transcription profile was investigated by Agilent microarray platform and quantitative real-time PCR to reveal alterations in neuronal functions in this brain region.

ORGANISM(S): Homo sapiens

DISEASE(S): major depression

SUBMITTER: Agnes Zvara

PROVIDER: E-MEXP-2607 | biostudies-arrayexpress |

REPOSITORIES: biostudies-arrayexpress

ACCESS DATA

Json Xml

Similar Datasets

Transcription profiling by array of mouse Srd5a3 mutant embryos

Project description:Transcriptional profiling of e8.5 mouse embryos comparing wt with Srd5a3Gt(betaGeo)703Lex/Gt(betaGeo)703Lex. Goal was to determine the developmental pathway disrupted in the mutant.

2010-07-01 | E-MEXP-2713 | biostudies-arrayexpress

Intubated patients developing Tracheobronchitis or Pneumonia have distinctive complement system gene expression signatures

Project description:The onset of an infection-specific transcriptional program precedes the clinical diagnosis in patients who developed Ventilator-associated pneumonia (VAP). Ventilator-associated tracheobronchitis (VAT) is another respiratory infection affecting outcomes in intubated patients, but interactions between VAT and VAP remains unknown.

2011-11-19 | E-MEXP-3001 | biostudies-arrayexpress

Transcription profiling by array of mouse hippocampus and prefrontal cortex from mouse model of anxiety

Project description:Total RNAs were extracted from the hippocampus and prefrontal cortex of anxious mice. The transcriptome of the two brain regions were investigated using a custom made Agilent 8 x 15k features oligo microarray.

2010-12-31 | E-MEXP-2603 | biostudies-arrayexpress

Transcription profiling of aortic samples from newborn and 6 week old C57/black6 wild type mice

Project description:Aortic samples ranging from the aortic valve to the diaphragm were harvested from 15 newborn and 15 six-week old C57/black6 wildtype mice. Frozen samples of 5 animals each were pulverized and directly dissolved in RNA pure (PeqLab) to get three samples for each group. Total RNA was isolated using phenol/chloroform extraction. For gene-expression analysis, 500 ng total RNA of each RNA sample was labeled using the Agilent single-color Quick-Amp Labeling Kit and hybridized on Agilent Whole Mouse Genome Microarrays (4x44K). For analysis of microRNA, 200 ng total RNA of each sample was labeled using the Agilent miRNA Labeling Reagent and Hyb Kit, and hybridized on Agilent Mouse miRNA Microarrays (8x15K) according to the manufacturer's instructions.

2010-08-01 | E-MEXP-2342 | biostudies-arrayexpress

Transcription profiling by array of human embryonic stem cell line H9 in response to ionizing radiation.

Project description:The study aimed to elucidate the whole human genome wide changes in gene expression in cultured human embryonic stem cells after ionizing radiation exposures

2010-12-01 | E-MEXP-2596 | biostudies-arrayexpress

Transcription profiling of Solanum tuberosum leaves in a diurnal time course

Project description:Transcriptional changes in potato leaves over a diurnal period

2010-02-08 | E-MEXP-2481 | biostudies-arrayexpress

Transcription profiling by array of mouse embyronic stem cells and ESD-EpiSCs

Project description:The comparison of mouse ESCs and ESD-EpiSCs was done using three biological replicates for each cell type. ESC samples (ESR1 p10, p20, ESR1/E p15) and ESD-EpiSC samples (EpiSC-7 p20, EpiSC-5 p22, and EpiSC-7 p25) were used for microarray analysis. Total RNA was extracted using Trizol and labeled and hybridized to Agilent Whole Mouse Genome Oligo 4X44K Microarrays (one-color platform) according to the manufacturers protocols.

2010-05-12 | E-MEXP-2691 | biostudies-arrayexpress

Transcription profiling by array of human natural killer cell lines, normal donors and clinical samples of natural killer cell neoplasms to detect tumor-specific genes

Project description:Comprehensive gene expression profiles of seven NK cell lines and eleven clinical samples of NK cell neoplasm were analyzed to detect tumor-specific genes. The gene expression profiles of NK cells from normal donor were analyzed as control samples.

2011-06-11 | E-MEXP-2996 | biostudies-arrayexpress

Transcription profiling of human monocytes incubated with or without dexamethasone and with Hb-Hp for different time

Project description:Human Monocytes were incubated with or without dexamethasone for 36h. Then non-primed or dexamethasone-primed monocytes were incubated with 500ug/ml Hb-Hp for 0h, 8h and 18h. RNA of all samples was analyzed with Agilent whole genome 4x44k microarrays (dual-color). For factorial analysis all samples were individually analyzed using the same reference sample (no pre-treatment, 0h).

2010-07-31 | E-MEXP-2598 | biostudies-arrayexpress

Transcription profiling by array of potato tuber buds from wild type and At CKX1 expressing tubers treated with gibberellic acid

Project description:Transcript profiling of wild type (cv. Solara) vs. At CKX 1 expressing potato tubers in an in vitro sprouting assay using gibberellic acid.

2011-01-01 | E-MEXP-2921 | biostudies-arrayexpress

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data