Browse
Submit Data
Databases
API
Help

Unknown,Transcriptomics,Genomics,Proteomics

Dataset Information

16 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Transcription profiling by array of Pseudomonas putida KT2442 and KT42C1

ABSTRACT: Effect of inactivating the phaC1 gene (PP_5003) on the transcriptome of cells growing exponentially in PHA production medium

ORGANISM(S): Pseudomonas putida

SUBMITTER: Isabel Escapa

PROVIDER: E-MEXP-3183 | biostudies-arrayexpress |

REPOSITORIES: biostudies-arrayexpress

ACCESS DATA

Json Xml

Similar Datasets

Transcription profiling of Pseudomonas putida KT2442 and KT42F

Project description:Effect of inactivating the phaF gene (PP_5007) on the transcriptome of cells growing exponentially in PHA production medium

2010-12-01 | E-MEXP-2970 | biostudies-arrayexpress

Transcription profiling of Pseudomonas putida PP3546 mutant

Project description:Transcription profiling of Pseudomonas putida PP3546 mutant

2013-04-02 | E-MEXP-3655 | biostudies-arrayexpress

Transcription profiling of wild type and crc mutant Pseudomonas putida growing exponentially in LB medium

Project description:Effect of inactivating the crc gene (PP_5292) on the transcriptome of cells growing exponentially in LB medium

2009-11-03 | E-MEXP-1886 | biostudies-arrayexpress

Transcription profiling by array of Pseudomonas putida grown at low temperature

Project description:Analysis of the changes in the transcriptomic profile of Pseudomonas putida growing at 10M-:C compared to that of growing at 30M-:C.

2011-06-30 | E-MEXP-2837 | biostudies-arrayexpress

Transcription profiling of Pseudomonas putida strains with wild type and inactivated cyoB alleles

Project description:Transcriptome comparison of two isogenic strains, one with a wild type cyoB allele and another with an inactivated cyoB allele

2022-11-21 | E-MEXP-639 | biostudies-arrayexpress

KT2440_Rhizosphere_Adaptation

Project description:A genome-wide analysis of gene expression of the root-colonizing bacterium Pseudomonas putida KT2440 in the rhizosphere of corn (Zea mays var. Girona). To identify reliable rhizosphere differentially expressed genes by this bacterium, populations of P. putida KT2440 previously exposed to a rhizospheric life style for seven days in the rhizosphere of corn were compared with populations previously exposed to a rhizospheric life style for a long period of 138 days.

2014-01-01 | E-MEXP-3804 | biostudies-arrayexpress

KT2440 vs KT2440_NAH7

Project description:Plasmid-free Pseudomonas putida KT2440 compared with the same strain harbouring NAH7 plasmid; all the cells were grown in minimal medium M9 with glucose

2012-07-27 | E-MEXP-3412 | biostudies-arrayexpress

Transcriptional profiling of Porphyromonas gingivalis W50 wild-type versus an isogenic FeoB1 mutant W50FB1

Project description:Reference design (using Cy5 labelled genomic DNA as the reference) to compare two genotypes: wild-type W50 vs an isogenic FeoB1 mutant W50FB1. Six biological replicates of both W50 and W50FB1, grown in continuous culture.

2022-01-10 | E-MEXP-3462 | biostudies-arrayexpress

KT2440 vs. KT2440 _NAH7 Naphthalene

Project description:Plasmid-free Pseudomonas putida KT2440 compared with the same strain harbouring NAH7 plasmid; all the cells were grown in minimal medium (M9 with glucose) saturated with naphthalene.

2012-07-27 | E-MEXP-3411 | biostudies-arrayexpress

Transcription profiling by array of Lactobacillus sakei strains grown on ribose or glucose to study ribose catabolism

Project description:We used a whole-genome microarray based on the sequenced strain Lactobacillus sakei 23K to study ribose catabolism in three Lactobacillus sakei strains by screening for differentially expressed genes when grown on ribose compared to glucose

2010-12-01 | E-MEXP-2892 | biostudies-arrayexpress

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data