Browse
Submit Data
Databases
API
Help

Metabolomics,Unknown,Transcriptomics,Genomics,Proteomics

Dataset Information

21 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Transcription profiling of C. elegans exposed to several different bacterial pathogens

ABSTRACT: Transcritome study of C.elegans exposed to multiple, different bacterial pathogens. Experiments were performed in set-replicates of either 3 or 5.
There are 3 for samples: Aeromonas hydrophila, Enterococcus faecalis, Erwinia carotovora and Photorhabdus luminescens.
There are 5 for samples: Serratia marcesens and Escherichia coli (control).

INSTRUMENT(S): ScanArray 4000XL [PerkinElmer]

ORGANISM(S): Caenorhabditis elegans

DISEASE(S): E. coli infected control

SUBMITTER: Jonathan Ewbank

PROVIDER: E-MEXP-766 | biostudies-arrayexpress |

REPOSITORIES: biostudies-arrayexpress

ACCESS DATA

Json Xml

Similar Datasets

Transcription profiling of C. elegans bombarded with tungsten beads

Project description:Worms bombarded with tungsten beads.Treated vs Control

2010-11-28 | E-MEXP-1366 | biostudies-arrayexpress

Transcription profiling of C. elegans infected with Burkholdeia pseudomallei

Project description:Worms infected with B. pseudomallei. Infections performed by David O'Callaghan.

2010-11-28 | E-MEXP-1365 | biostudies-arrayexpress

Transcription profiling of C. elegans infected with Y. pestis

Project description:Worms infected with Y.pestis KIM5 strain. Assayed at 24 h p.i.

2010-11-28 | E-MEXP-1367 | biostudies-arrayexpress

Transcription profiling of C. elegans IG274 wt frIs7 and IG339 nipi-1(fr1) frIs7 after infection with Dreshmeria coniosporia

Project description:1.Sample Growth Conditions protocols Eggs from IG274 wt; frIs7 and IG339 nipi-1(fr1); frIs7 worms cultivated at 25ÃÂ°C were allowed to hatch in the absence of food at 25ÃÂ°C for 16 hours. Synchronised larvae were transferred to NGM agar plates lawned with OP50 and cultivated at 25°C for 48 hours. 2.Sample Treatment protocols Synchronised IG274 wt; frIs7 and IG339 nipi-1(fr1); frIs7 worms at the young L4 stage were infected with freshly harvested spores of Dreshmeria coniosporia. After 24 hours at 25°C, the worms were collected into trizol for further RNA extraction. Controls worms were non infected.

2009-10-29 | E-MEXP-1364 | biostudies-arrayexpress

Transcription profiling of C. elegans strains IG274 wt;frIs7 and CZ5701 dapk-1(ju4);frIs7 infected with Dreshmeria coniosporia

Project description:1.Sample Growth Conditions protocols Eggs from IG274 wt; frIs7 and dapk-1(ju4); frIs7 worms cultivated at 25°C were allowed to hatch in the absence of food at 25°C for 16 hours. Synchronised larvae were transferred to NGM agar plates lawned with OP50 and cultivated at 25°C for 48 hours. 2.Sample Treatment protocols Synchronised IG274 wt; frIs7 and CZ5701 dapk-1(ju4); frIs7 worms at the young L4 stage were infected with freshly harvested spores of Dreshmeria coniosporia. After 24 hours at 25°C, the worms were collected into trizol for further RNA extraction. Controls worms were non infected.

2008-11-28 | E-MEXP-1363 | biostudies-arrayexpress

Transcription profiling of C. elegans 12 hours and 24 hours post exposure to fungal pathogen, Drechmeria coniospora

Project description:Transcriptome study of C.elegans animals 12 hours and 24 hours post exposure to fungal pathogen, Drechmeria coniospora.

2007-07-04 | E-MEXP-479 | biostudies-arrayexpress

Transcription profiling of C. elegans inducible response to nematocidal B. thuringiensis spores

Project description:Transcriptional response of C.elegans against nematocidal B. thuringiensis. Experiments were performed in set-replicates of either 3 for the C. elegans strain N2 or 4 for the strains MY15 and MY18.

2009-08-01 | E-MEXP-2168 | biostudies-arrayexpress

Transcription profiling of E. coli SL2 cells treated with cycloheximide and LPS

Project description:E. coli lipopolysacharide was treated on SL2* cells for 1hr, 4 and 12hrs respectivly. cDNA from those cells was compared with control. For one sample, cyclohexamide was treated for 1hr and then LPS was treated for 4hrs. Then, compared with control.

2004-09-21 | E-MEXP-172 | biostudies-arrayexpress

Transcription profiling of Pectobacterium atrosepticum wild and ExpI mutants to determine the quorum sensing regulon

Project description:Genome-wide in planta determination of the quorum sensing regulon in Pectobacterium atrosepticum, through gene expression analysis of ExpI mutants using Agilent custom microarrays.

2008-07-01 | E-TABM-384 | biostudies-arrayexpress

Transcription profiling of C.elegans response to Drechmeria coniospora infection at 12 hours

Project description:Response of C. elegans to infection by Drechmeria coniospora at 12 hours. This submission is not MIAME compliant as only a subset of each raw data file has been supplied by the submitter.

2004-03-28 | E-MEXP-19 | biostudies-arrayexpress

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data