Browse
Submit Data
Databases
API
Help

Metabolomics,Unknown,Transcriptomics,Genomics,Proteomics

Dataset Information

13 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Transcription profiling of leaves from wild type and AtCCME-HIS over-expressing Arabidopsis plants

ABSTRACT: The homozygous arabidopsis line 9S9 overproducing AtCCME-HIS (At3g1790), a mitochondrial heme chaperon involved in c-type cytochrome maturation will be compared with the corresponding wild type (Wassilievskjia).

INSTRUMENT(S): GenePix 4000A [Axon Instruments]

ORGANISM(S): Arabidopsis thaliana

SUBMITTER: Frédérique Bitton

PROVIDER: E-MEXP-779 | biostudies-arrayexpress |

REPOSITORIES: biostudies-arrayexpress

ACCESS DATA

Json Xml

Similar Datasets

Transcription profiling of Arabidopsis gcn5 knockout mutants

Project description:Two gcn5 KO mutants were grown on MS during 10 days (1.03 boyes stage) : gcn5-1 and gcn5-2. Each mutant was compared to the wild type (Ws)

2008-02-07 | E-MEXP-1241 | biostudies-arrayexpress

Transcription profiling of Arabidopsis plants treated with antimycine A, an inhibitor of the cytochrome pathway

Project description:Presence of an inhibitor of the cytochrome pathway (antimycine A). This treatment induces the expression of a gene coding for an alternative oxydase (AOX1a) and one of the two genes coding for apocytochrome c (CYTc-a).

2006-07-28 | E-MEXP-778 | biostudies-arrayexpress

Transcription profiling of Arabidopsis under water stress was applied to transgenic and non transformed three weeks old arabidopsis plants control and overexpressing line hahb-4 in relation to abiotic stress

Project description:We want to know which genes are overexpressed or down regulated in Arabidopsis plants transformed with the sunflower hahb-4 homeodomain transcription factor with respect to non transformed ones in control and water stress conditions. This gene, hahb4, confers drought tolerance to transgenic arabidopsis plants. Aa water stress was applied to transgenic and non transformed three weeks old arabidopsis plants control and overexpressing line

2005-06-13 | E-MEXP-394 | biostudies-arrayexpress

Transcription profiling of host response to root-knot nematode infection in Arabidopsis

Project description:During a compatible interaction, root-knot nematodes (Meloidogyne spp.) induce the redifferentiation of root cells into multinucleate nematode feeding cells giant cells. These hypertrophied cells result from repeated nuclear divisions without cytokinesis, are metabolically active and present features typical of transfer cells. Hyperplasia of the surrounding cells leads to formation of the typical root gall. We investigate here the plant response to root-knot nematodes.

2005-01-11 | E-MEXP-233 | biostudies-arrayexpress

erwinia chrysanthemi treatments-BOS1 signaling pathway in Arabidopsis thaliana / Erwinia chrysanthemi interaction

Project description:ra06-04_bos1 - erwinia chrysanthemi treatments - BOS1 signaling pathway in Arabidopsis thaliana / Erwinia chrysanthemi interaction - Comparison of 4 transcriptoms : Wt Arabidopsis ecotype infected by Wt Erwinia chrysanthemi strain, bos1 Arabidopsis mutant infected by Wt Erwinia chrysanthemi strain, Wt Arabidopsis ecotype infected by BOS1-non inducing pelBC Erwinia chrysanthemi mutant, Wt Arabidopsis ecotype buffer inoculated. Experiments were repeated 3 times. Keywords: normal vs disease comparison 9 dye-swap - CATMA arrays

2009-06-13 | E-GEOD-11793 | biostudies-arrayexpress

Transcription profiling of the1, prc1, prc1_the1 and prc1_the2 gene knockout Arabidopsis dark-grown hypocotyls to identify genes involved in cell wall integrity signalling

Project description:Inhibition of cellulose synthesis by chemical inhibitors or in a mutant background leads to rapid inhibition of cell elongation. This inhibition appears to be an active process, which involves feedback signalling from the cell wall. We have isolated two loci THE1 and THE2, which are identified by mutations that partially suppress the dark-grown hypocotyl phenotype in a mutant background for cellulose synthase catalytic subunit CESA6_PROCUSTE1. THE1 encodes a receptor kinase and may play a role in this feedback signalling process. To identify genes that are regulated by THE1 and THE2, we compared the transcript profiles of 5 day-old dark-grown seedlings of the1-1_prc1-1 with prc1-1 ; the1-3_prc1-8 with prc1-8 ; prc1-8 or the1-3 with WS and the2-1_prc1-1 with prc1-1.

2007-03-31 | E-MEXP-638 | biostudies-arrayexpress

Transcription profiling of Arabidopsis mgo3 mutant leaves

Project description:Identification of molecular target of MGO3 genes. 2 first leaves of mgo3-2 mutant or wild-type plants (WS ecotype) were harvested from plants grown during 2 weeks in vitro on MS medium in long days conditions. 3 repeats have been done for each samples

2005-04-26 | E-MEXP-196 | biostudies-arrayexpress

Transcription profiling of Arabidopsis strain with T-DNA insertions in the HAF2 gene

Project description:T-DNA insertions in the HAF2 gene are characterised. The mutation of the gene induced production of pale young leaves. Genetic analysis showed that HAF2 is required for both phytochrome and cryptochrome signalling. Accordingly, light-inducible gene expression and CAB2 promoter activity were affected by the mutation. The present transcriptome analysis showed that the mutation affected about 9% of Arabidopsis genes in 14 day-old leaves.

2004-10-05 | E-MEXP-178 | biostudies-arrayexpress

Transcription profiling of Arabidopsis Cul3a-1 mutant and control plants during germination in far red light

Project description:Parallel germination of Cul3a-1 mutant and control plants in far red light.

2005-01-01 | E-MEXP-175 | biostudies-arrayexpress

Transcription profiling of Arabidopsis argonaute mutants to identify the regulation pathways implied in adventitious root formation control

Project description:Identification of the régulation pathways implied in adventitious root formation control in Arabidopsis etiolated seedlings. 2 mutants : a null allele and a weak allele of the ARGONAUTE gene. 4 repetitions in 2 pools for each sample.

2006-08-23 | E-MEXP-790 | biostudies-arrayexpress

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data