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Metabolomics,Unknown,Transcriptomics,Genomics,Proteomics

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Transcription profiling of Medicago truncatula seeds at 14, 16, 20, 24, and 36 days post pollination

ABSTRACT: This experiment investigates a time series of seed development in Medicago truncatula. Time points 14, 16, 20, 24, and 36 days post pollination are hybridized against a 12 days post pollination reference stage.

INSTRUMENT(S): Scanning hardware

ORGANISM(S): Medicago truncatula

SUBMITTER: Helge Küster

PROVIDER: E-MEXP-907 | biostudies-arrayexpress |

REPOSITORIES: biostudies-arrayexpress

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Publications

A combined proteome and transcriptome analysis of developing Medicago truncatula seeds: evidence for metabolic specialization of maternal and filial tissues.

Gallardo Karine K Firnhaber Christian C Zuber Hélène H Héricher Delphine D Belghazi Maya M Henry Céline C Küster Helge H Thompson Richard R

Molecular & cellular proteomics : MCP 20070911 12

A comparative study of proteome and transcriptome changes during Medicago truncatula (cultivar Jemalong) seed development has been carried out. Transcript and protein profiles were parallel across the time course for 50% of the comparisons made, but divergent patterns were also observed, indicative of post-transcriptional events. These data, combined with the analysis of transcript and protein distribution in the isolated seed coat, endosperm, and embryo, demonstrated the major contribution made ...[more]

PMID: 17848586

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Transcription profiling of Medicago truncatula seed coats and endosperm compared to embryos

Project description:Comparison of gene expression in Medicago truncatula seed coats and endosperm, both against a reference sample from embryos.

2007-10-08 | E-MEXP-904 | biostudies-arrayexpress

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Project description:To study the development of flowers and pods in Medicago truncatula, eight stages of flower and pod development (designated F1-F4 and P1-P4, respectively) were chosen for tissue harvesting. As a common reference, young but already fully developed leaves (corresponding to the third-distant node from the apices) from plants grown in the field were selected. For each stage of flower and pod development, two biological replicates were harvested, one from plants grown in the greenhouse and one from plants grown in the field.

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Transcription profiling of Medicago truncatula mature, nitrogen-fixing root nodules was vs gene expression in uninoculated roots

Project description:Gene expression in mature, nitrogen-fixing root nodules was compared to gene expression in uninoculated roots.

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Transcription profiling of Medicago truncatula treated with Sinorhizobium meliloti Nodulation factors at 6 and 48 h time points

Project description:This experiment studies the effect of purified Sinorhizobium meliloti Nodulation factors (Nod-factors, NF) on gene expression in the model legume Medicago truncatula.

2007-03-31 | E-MEXP-943 | biostudies-arrayexpress

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Transcription profiling of developing wild type pea seeds and those expressing anti-ABA antibodies

Project description:ABA regulates in plants a wide range of developmental events, mediates responses to environmental stress and is necessary to proceed through seed maturation and to acquire desiccation tolerance and dormancy. Immuno-modulation is a suitable means to study ABA functions during seed maturation. Anti-ABA single chain antibody was expressed in pea seed driving LeB4-promoter (Saalbach et al., High-level expression of a single chain Fv fragment (scFv) antibody in transgenic pea seeds J. Plant Physiol. 2001 158: 529-533), which produced only a weak phenotype with slightly decreased seed weight, globulin/albumin and total nitrogen content (aABA line 16 cultivar Erbi). In another approach with a stronger, improved USP-promoter used to express the anti-ABA antibody in pea seeds a different phenotype emerged (aABA line 7, cultivar Eifel). In this line individual seed weight increased by 20 to 30% together with higher globulin and albumin content. To dissect the aABA phenotype at the molecular level, a search for genes with differential expression patterns in transgenic plant versus wild type seeds has been performed using 6k-oligo microarray analysis. cDNA probes were prepared from RNA isolated from embryo of developing seeds of wild type (12, 18, and 22 DAP) and transgenic aABA plants (12, 18, and 22 DAP), which correspond to the transition phase of seed development, and 6k-oligo microarray.

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Transcription profiling of Medicago truncatula cell suspension cultures treated with invertase and/or S.meliloti lipopolysaccharide

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RNAi knock down of ADP-glucose pyrophosphorylase (AGP) in Pisum sativum developing cotyledons

Project description:During seed growth, sugar and nitrogen compounds confer regulatory control on storage activities. Thus, seed storage production could be regulated by the supply of nutrients. In order to improve nitrogen flux into the embryo, transgenic pea lines were created where ADP-glucose pyrophosphorylase (AGP) from Pisum sativum has been repressed by RNAi approach in the seeds under control of the seed-specific LeB4 promotor (Bäumlein et al. Cis-analysis of a seed protein gene promoter: the conservative RY repeat CATGCATG within legumin box is essential for tissue-specific expression of a legumin gene. Plant J 1992 2: 233-239). The plastidial enzyme AGP catalyzes the reaction of glucose-1-phosphate and ATP to pyrophosphate and ADP-glucose, which is the substrate for starch synthase. The AGP activity and transcript levels were strongly decreased in three independent transgenic lines. Repression of AGP results in a wrinkled seed phenotype obviously due to transient accumulation of free sugars during maturation. Mature seeds have reduced starch content whereas the protein concentration is higher due to increased fractions of albumins and globulins. Repression of AGP interferes with storage protein metabolism and alters fluxes of nitrogen during seed growth. The influence of decreased AGP on altered gene expression in developing cotyledons was analysed using a 6k-Oligo-microarray. Ps6kOLI1 microarray hybridization were performed using three independent biological replicates of four developmental stages (20, 25, 30 and 35 DAP) from seeds of the transgenic line iAGP-3.

2008-09-01 | E-MEXP-1749 | biostudies-arrayexpress

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