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Metabolomics,Unknown,Transcriptomics,Genomics,Proteomics

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Whole genome bisulfite sequencing of liver samples of five mammals (human, rhesus macaque, mouse, rat and dog)

ABSTRACT: This study aims to investigate the DNA methylation patterns at transcription factor binding regions and their evolutionary conservation with respect to binding activity divergence. We combined newly generated bisulfite-sequencing experiments in livers of five mammals (human, macaque, mouse, rat and dog) and matched publicly available ChIP-sequencing data for five transcription factors (CEBPA, HNF4a, CTCF, ONECUT1 and FOXA1). To study the chromatin contexts of TF binding subjected to distinct evolutionary pressures, we integrated publicly available active promoter, active enhancer and primed enhancer calls determined by profiling genome wide patterns of H3K27ac, H3K4me3 and H3K4me1.

INSTRUMENT(S): Illumina HiSeq 4000, Illumina HiSeq 2000

ORGANISM(S): Homo sapiens

SUBMITTER: Martina Rimoldi

PROVIDER: E-MTAB-11946 | biostudies-arrayexpress |

REPOSITORIES: biostudies-arrayexpress

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