Browse
Submit Data
Databases
API
Help

Unknown,Transcriptomics,Genomics,Proteomics

Dataset Information

84 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Whole genome sequencing of supra-MIC tunicamycin adaptors in Cryptococcus neoformans

ABSTRACT: Cryptococcus neoformans lab strain H99 was spread on YPD plate supplemented with 0.25ug/ml tunicamycin. Randomly 30 adaptors were chosen. 10 of them were used to obtain revertatants which lost aneuploidy step by step. These adaptors, and the revertants, as well as the parent, were sequenced.

INSTRUMENT(S): DNBSEQ-T7

ORGANISM(S): Cryptococcus neoformans var. grubii H99

SUBMITTER: Sun Liuliu

PROVIDER: E-MTAB-12276 | biostudies-arrayexpress |

REPOSITORIES: biostudies-arrayexpress

ACCESS DATA

Json Xml

Similar Datasets

Whole genome sequencing of VMA11 deletion strain derived fluconazole adaptors in Candida albicans

Project description:Candida albicans strains SC5314 and YJB-T1891 were used as wild type to delete VMA11. The deletion strains (TJ926 and TJ927) were spread on YPD plate supplemented with 1μg/ml fluconazole. Randomly 96 adaptors derived from TJ926 and 96 adaptors derived from TJ927 were tested with disk diffusion assay. Among the resistant adaptors, randomly 15 adaptors (A4-A18) and 48 adaptors (A19-A66) derived from TJ926 were sequenced.

2023-02-28 | E-MTAB-12673 | biostudies-arrayexpress

Whole genome sequencing of tebuconazole adaptors in Candida auris

Project description:Candida auris clinical isolate FY279 was exposed to tebuconazole (32μg/ml). Randomly14 adaptors were chosen. 10 adaptors obtained resistance to tebuconazole. These resistant adaptors were sequenced.

2023-05-10 | E-MTAB-12802 | biostudies-arrayexpress

Whole genome sequencing of caspofungin adaptors in Candida auris

Project description:Candida auris clade III isolate B12039 was spread on YPD plate supplemented with 250 ng/ml, 500 ng/ml, 1000 ng/ml, and 2000 ng/ml of caspofungin. In total, 33 adaptors were chosen for further analysis. We did sequencing of them as as well as the parent. 9 adaptors (250-1 - 250-9) were obtained from YPD+250ng/ml caspofugin. 6 adaptors (500-1 - 500-6) were obtained from YPD+250ng/ml caspofugin. 6 adaptors (1000-1 - 1000-6) were obtained from YPD+250ng/ml caspofugin. 12 adaptors (2000-1 - 2000-12) were obtained from YPD+250ng/ml caspofugin

2021-07-23 | E-MTAB-10627 | biostudies-arrayexpress

Whole genome sequencing of Candida albicans clinical isolate YJB-T490 derived miconazole adaptors

Project description:YJB-T490 was spread on YPD-agar plates supplemented with miconazole (0.008-2ug/mL). Randomly 3 adaptors from each drug plate were sequenced. In addition, 2 miconazole adaptors derived from SC5314, and 6 adaptors derived from CDR1 deletion strain were also sequenced.

2024-06-15 | E-MTAB-14133 | biostudies-arrayexpress

Whole genome sequencing of amphotericin B adaptors in Cryptocooccus neoformans

Project description:We exposed Cryptococcus neoformans lab strain H99 to amphtericin B and obtained some adaptors. We did sequencing of these adaptors.

2021-03-12 | E-MTAB-10172 | biostudies-arrayexpress

Whole genome sequencing of SC5314-derived fluconazole adaptors

Project description:Candida albicans lab strain SC53114 was used to obtain fluconazole-tolerant adaptors. 53 adaptors as well as the parent strain were sequenced.

2022-09-24 | E-MTAB-12175 | biostudies-arrayexpress

Whole genome sequencing of caspofungin adaptors derived from a chromosome 1 trisomy strain in Candida parapsilosis

Project description:Candida parapsilosis chromosome 1 trisomy strain TJ74 was exposed to 400ng/ml caspofungin. Randomly 30 adaptors were chosen. These adaptors were sequenced.

2022-09-30 | E-MTAB-12321 | biostudies-arrayexpress

Whole genome sequencing of pyraclostrobin adaptors in Cryptococcus neoformans

Project description:Cryptococcus neoformans lab strain H99 was spread on YPD plate supplemented with 1.5ug/ml pyraclostrobin. Randomly 23 adaptors were chosen. These adaptors were sequenced.

2023-04-06 | E-MTAB-12415 | biostudies-arrayexpress

Whole genome sequencing of Candida albicans tunicamycin adaptors

Project description:We used Candida albicans lab strain SC5314 to obtain tunicamycin adaptors. We did whole genome sequencing of the adaptors and the parent as well.

2021-04-24 | E-MTAB-10358 | biostudies-arrayexpress

Whole genome sequencing of aureobasidin A adaptors in Cryptococcus neoformans

Project description:Cryptococcus neoformans lab strain H99 was exposed to 600ng/ml aureobasidin A. Randomly 30 adaptors were chosen. These adaptors and the wild type strains were sequenced.

2023-02-08 | E-MTAB-12319 | biostudies-arrayexpress

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data