Single cell profiling of SFB induced transcriptomic changes in small intestinal epithelium and immune system.

ABSTRACT: In this project we profiled small intestinal epithelium, lamina propria immune cells as well as intraepithelial immune cells from 5-weeks old WT mice derived from Jackson laboratories and littermate colonized with segmented filamentous bacteria (SFB) 2 weeks prior to analysis, using 10x droplet-based single-cell RNA sequencing.

INSTRUMENT(S): NextSeq 500

ORGANISM(S): Mus musculus

SUBMITTER: Jan Kubovčiak 

PROVIDER: E-MTAB-12391 | biostudies-arrayexpress |

REPOSITORIES: biostudies-arrayexpress