Spatially resolved multiomics of human cardiac niches - Multiome ATAC

ABSTRACT: Using Multiome and previously published sc/snRNA-seq data, we studied eight anatomical regions of the human heart including left and right ventricular free walls (LV and RV), left and right atria (LA and RA), left ventricular apex (AX), interventricular septum (SP), sino-atrial node (SAN) and atrioventricular node (AVN). For the first time, we profile the cells of the human cardiac conduction system, revealing their distinctive repertoire of ion channels, G-protein coupled receptors and cell-cell interactions. We map the identified cells to spatial transcriptomic data to discover cellular niches within the eight regions of the heart.

INSTRUMENT(S): Single nuclei were captured using the 10x Genomics Chromium Controller., Illumina NovaSeq 6000

ORGANISM(S): Homo sapiens

SUBMITTER: Kazumasa Kanemaru 

PROVIDER: E-MTAB-12919 | biostudies-arrayexpress |

REPOSITORIES: biostudies-arrayexpress