Browse
Submit Data
Databases
API
Help

Metabolomics,Unknown,Transcriptomics,Genomics,Proteomics

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

RNA-seq of human GM12878 and JURKAT cells treated with aphidicolin and Sendai virus against untreated controls

ABSTRACT: Human B lympoblastoid cells, GM12878 and human T cells, JURKAT, were treated with aphidicolin (to arrest cells at G1/S boundary) for 24h, the last 12h with the Sendai virus. The experiment was performed in three biological replicates. Gene expression changes upon aphidicolin and or infection between two cell lines was observed.

INSTRUMENT(S): Illumina HiSeq 2000

ORGANISM(S): Homo sapiens

SUBMITTER: Gozde Buyukkahraman

PROVIDER: E-MTAB-13340 | biostudies-arrayexpress |

REPOSITORIES: biostudies-arrayexpress

ACCESS DATA

Json Xml

Similar Datasets

Single cell RNA-seq of human GM12878 cells infected with Sendai virus and treated with aphidicolin against untreated control

Project description:Single cell RNA sequencing (scRNA-seq) of GM12878 cells upon G1/S blocker or control (DMSO) and Sendai virus infection.

2025-08-27 | E-MTAB-13347 | biostudies-arrayexpress

ATAC-seq of human GM12878 cells treated with aphidicolin and infected with Sendai virus against untreated control

Project description:ATAC-seq of human GM12878 cells to detect chromatin accessibility changes upon G1/S arrest (aphidicolin treated samples) and /or infection (Sendai virus) compared to control.

2025-08-27 | E-MTAB-13339 | biostudies-arrayexpress

Time course ChIP-seq analysis of the human GM12878 lymphoblasts upon Sendai Virus infection

Project description:Time course ChIP-seqwas performed to determine global changes in histone H3 lysine 27 acetylation (H3K27Ac) at enhancers upon Sendai Virus infection.

2018-10-07 | E-MTAB-6050 | biostudies-arrayexpress

Time course GRO-seq analysis of the human GM12878 lymphoblasts upon Sendai Virus infection.

Project description:Densely sampled time course GRO-seq analysis was performed to determine global transcriptional activities at both enhancers and promoters upon Sendai Virus infection.

2018-10-07 | E-MTAB-6047 | biostudies-arrayexpress

Genome-wide mapping of RNA Pol II binding site (GM12878)

Project description:We report the results of chromatin immunoprecipitation following by high-thoughput sequencing (ChIP-Seq) using the GA II platform from Illumina for the human RNA Polymerase II in GM12878 cells. We have also generated a sequenced input DNA datasets for GM12878 cells. For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODEDataReleasePolicyFinal2008.pdf Map binding sites of RNA Polymerase II in the genome of GM12878 cells. The GM12878 input data has been deposited in GEO as GSM487430.

2009-12-31 | E-GEOD-19550 | biostudies-arrayexpress

Genome-wide mapping of RNA Pol III binding site (GM12878)

Project description:We report the results of chromatin immunoprecipitation following by high-thoughput sequencing (ChIP-Seq) using the GA II platform from Illumina for the human RNA Polymerase III in GM12878 cells. We have also generated a sequenced input DNA datasets for GM12878 cells. For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODEDataReleasePolicyFinal2008.pdf Map binding sites of RNA Polymerase III in the genome of GM12878 cells.

2009-12-31 | E-GEOD-19549 | biostudies-arrayexpress

Small RNA profiling during Sendai virus infection

Project description:Small RNAs were profiled during Sendai virus infection of human A549 cells to identify changes in microRNA abundance during the cellular antiviral response. Examination of microRNA abundance during Sendai virus infection.

2013-06-10 | E-GEOD-43966 | biostudies-arrayexpress

RNA-seq of human GM12878 and JURKAT cells treated with aphidicolin and Sendai virus against untreated controls

Project description:RNA-seq of human GM12878 and JURKAT cells treated with aphidicolin and Sendai virus against untreated controls

| PRJEB65975 | ENA

ATAC-seq of human GM12878 cells treated with aphidicolin and infected with Sendai virus against untreated control

Project description:ATAC-seq of human GM12878 cells treated with aphidicolin and infected with Sendai virus against untreated control

| PRJEB65974 | ENA

Single cell RNA-seq of human GM12878 cells infected with Sendai virus and treated with aphidicolin against untreated control

Project description:Single cell RNA-seq of human GM12878 cells infected with Sendai virus and treated with aphidicolin against untreated control

| PRJEB66193 | ENA