Total mRNA sequence dataset from Pectobacterium atrosepticum colonising potato or radish roots

ABSTRACT: Pectobacterium atrosepticum (Pba) is a gram-negative bacterium which causes blackleg and tuber soft rot on potato. To investigate the molecular processes and responses involved in Pba-host (potato) and Pba-non-host (radish) interactions, under laboratory conditions, we used total RNA-sequencing to measure the gene expression patterns from all three species. Samples from infected and non-infected plant roots were collected after fourteen days of inoculation with Pba SCRI_1039 and subjected to total RNA-sequencing on an Illumina sequencing platform.

INSTRUMENT(S): Illumina NovaSeq 6000

ORGANISM(S): Solanum tuberosum

SUBMITTER: Susan Jones 

PROVIDER: E-MTAB-13434 | biostudies-arrayexpress |

REPOSITORIES: biostudies-arrayexpress