4C-seq to detect the interaction of the EVI1 promoter (viewpoint of the experiment) with chromatin regulatory elements in a selection of ovarian cancer cell lines and other cancer cell lines

ABSTRACT: The EVI1 promoter was chosen as the viewpoint of the experiment. The purpose of this experiment was to detect potential cis-interactions of the EVI1 promoter with regulatory elements. 4C-seq was performed in the ovarian cancer cell lines COV-434, ES-2, Kuramochi, OAW28, OAW42, OVISE, SKOV-3, TOV-112D. Furthermore, 4C-seq was performed in pancreatic cancer: BxPC-3, Capan2 and MiaPaCa2; colon cancer: Caco2, HT-29 and SW-480: leukaemia and lymphoma: HEL, MOLM-1, F36P and U-937; breast cancer: MDA-MB-231, MDA-MB-468 and T47D; and, lung cancer: RERF-LC-MS, NCI-H520 and Sk-Lu-1. For more information on the cell lines, see Supplementary Table xy.

INSTRUMENT(S): Illumina HiSeq 2000

ORGANISM(S): Homo sapiens

SUBMITTER: Leonie Smeenk 

PROVIDER: E-MTAB-14772 | biostudies-arrayexpress |

REPOSITORIES: biostudies-arrayexpress