Metabolomics,Unknown,Transcriptomics,Genomics,Proteomics

Dataset Information

Bulk RNA sequencing of endometrial organoids in the IVMC protocol

ABSTRACT: Six independent endometrial organoid cultures were subjected to the in vitro menstrual cycle protocol (IVMC), which recapitulates the events of differentiation, hormonal withdrawal, breakdown, repair and regeneration. Samples were collected at various timepoints (Pre-diff, P4-diff, Horm Withdr 24h, Horm Withdr 48h, Repair 24h, E2-diff 24h, E2-diff 48h) and analysed with bulk RNAseq to validate the protocol and investigate the dynamic transcriptomic changes across timepoints.

ORGANISM(S): Homo sapiens

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PROVIDER: E-MTAB-15118 | biostudies-arrayexpress |

SECONDARY ACCESSION(S): ERP172307

REPOSITORIES: biostudies-arrayexpress

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Project description:Roblitz2013 - Menstrual Cycle following GnRH analogue administration The model describes the menstrual cycle feedback mechanisms. GnRH, FSH, LH, E2, P4, inbibins A and B, and follicular development are modelled. The model predicts hormonal changes following GnRH analogue administration. Simulation results agree with measurements of hormone blood concentrations. The model gives insight into mechanisms underlying gonadotropin supression. This model is described in the article: A mathematical model of the human menstrual cycle for the administration of GnRH analogues. Röblitz S, Stötzel C, Deuflhard P, Jones HM, Azulay DO, van der Graaf PH, Martin SW. J. Theor. Biol. 2013 Mar; 321: 8-27 Abstract: The paper presents a differential equation model for the feedback mechanisms between gonadotropin-releasing hormone (GnRH), follicle-stimulating hormone (FSH), luteinizing hormone (LH), development of follicles and corpus luteum, and the production of estradiol (E2), progesterone (P4), inhibin A (IhA), and inhibin B (IhB) during the female menstrual cycle. Compared to earlier human cycle models, there are three important differences: The model presented here (a) does not involve any delay equations, (b) is based on a deterministic modeling of the GnRH pulse pattern, and (c) contains less differential equations and less parameters. These differences allow for a faster simulation and parameter identification. The focus is on modeling GnRH-receptor binding, in particular, by inclusion of a pharmacokinetic/pharmacodynamic (PK/PD) model for a GnRH agonist, Nafarelin, and a GnRH antagonist, Cetrorelix, into the menstrual cycle model. The final mathematical model describes the hormone profiles (LH, FSH, P4, E2) throughout the menstrual cycle of 12 healthy women. It correctly predicts hormonal changes following single and multiple dose administration of Nafarelin or Cetrorelix at different stages in the cycle. This model is hosted on BioModels Database and identified by: BIOMD0000000494 . To cite BioModels Database, please use: BioModels Database: An enhanced, curated and annotated resource for published quantitative kinetic models . To the extent possible under law, all copyright and related or neighbouring rights to this encoded model have been dedicated to the public domain worldwide. Please refer to CC0 Public Domain Dedication for more information.

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Bulk RNA sequencing of endometrial organoids in the IVMC protocol

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