Metabolomics,Unknown,Transcriptomics,Genomics,Proteomics

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Pacbio Hifi sequencing of a male cape dune mole-rat kidney sample

ABSTRACT: One PacBio Hifi sequencing run from the kidney of a single male CDMR (Bathyergus suillus) sample used to make the mBatSui1.1.primary genome assembly as an evolutionary comparator to our telomere-to-telomere naked mole-rat genome assembly. Specifically, we assembled a CDMR from a wild-derived sample in South African cape and sequenced in Toronto, Canada, using PacBio HiFi (89 Gb, read N50 = 18 Kb) and ONT-ULK (55 Gb, read N50 = 43 Kb) reads (contig N50 = 33 Mb, Compleasm S = 99%, QV = 71.0). This accession stores the Pacbio Hifi data for this assembly.

INSTRUMENT(S): PacBio RS II

ORGANISM(S): Bathyergus suillus

SUBMITTER: Dustin Sokolowski 

PROVIDER: E-MTAB-17312 | biostudies-arrayexpress |

REPOSITORIES: biostudies-arrayexpress

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Publications

An updated reference genome sequence and annotation reveals gene losses and gains underlying naked mole-rat biology.

Sokolowski Dustin J DJ   Miclăuș Mihai M   Nater Alexander A   Faykoo-Martinez Mariela M   Hoekzema Kendra K   Zuzarte Philip P   Monis Simon S   Alvi Sana Akhtar SA   Erdmann Jason J   Erdmann Archana Lal AL   Kumaragurubaran Rathnakumar R   Bayerl Jonathan J   Yoo DongAhn D   Karimpour Nadia N   Ungerleider Kyra K   Hou Huayun H   J Martin Fergal F   Hourlier Thibaut T   Clarke Zoe Z   Lischer Heidi E L HEL   Leordean Dragos V DV   Jiang Yiyue Y   Pugh Trevor J TJ   Smith Ewan St J ESJ   Haggerty Leanne L   Laird Diana J DJ   Lilue Jingtao J   Holmes Melissa M MM   Eichler Evan E EE   Bruggmann Rémy R   Simpson Jared T JT   Balmus Gabriel G   Wilson Michael D MD  

bioRxiv : the preprint server for biology 20241128

The naked mole-rat (NMR; <i>Heterocephalus glaber</i>) is a eusocial subterranean rodent with a highly unusual set of physiological traits that has attracted great interest amongst the scientific community. However, the genetic basis of most of these traits has not been elucidated. To facilitate our understanding of the molecular mechanisms underlying NMR physiology and behaviour, we generated a long-read chromosomal-level genome assembly of the NMR. This genome was subsequently annotated and in  ...[more]

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