Browse
Submit Data
Databases
API
Help

Metabolomics,Unknown,Transcriptomics,Genomics,Proteomics

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

GDNA sequencing for population VIII from Madec et al, 2026 (progeny from a Col-0 crossed with 7RV168xCt-EMS)

ABSTRACT: This experiment aims at analyzing crossover distribution genome-wide in the plant Arabidopis thaliana in response to varying patterns of polymorphism across all five chromosomes. In the publication (Madec et al, 2026), two different Recombinant Inbred Lines were used : 7RV168 and 7RV498, from a Columbia-0xCatania-1 (Col-0xCt-1) population (from Simon et al., 2008). Each were backcrossed to EMS treated Col-0 and Ct-1 to produce F1 plants. F1 plants were crossed as female or male to each other to produce F2 plants, which were sequenced. Refer to Figure 1 of Madec et al, 2026 for more information. In this specific population VIII, the F2 plants sequenced come from a cross between a Col-0 plant as female and an F1 7RV168xCt-EMS as male. Other populations can be found linked to this submission

INSTRUMENT(S): NextSeq 2000

ORGANISM(S): Arabidopsis thaliana

SUBMITTER: Chloe Girard

PROVIDER: E-MTAB-17470 | biostudies-arrayexpress |

REPOSITORIES: biostudies-arrayexpress

ACCESS DATA

Json Xml

Similar Datasets

gDNA sequencing for population IV from Madec et al, 2026 (progeny from 7RV168xCt-EMS F1 crossed with 7RV168xCol-EMS)

Project description:This experiment aims at analyzing crossover distribution genome-wide in the plant Arabidopis thaliana in response to varying patterns of polymorphism across all five chromosomes. In the publication (Madec et al, 2026), two different Recombinant Inbred Lines were used : 7RV168 and 7RV498, from a Columbia-0xCatania-1 (Col-0xCt-1) population (from Simon et al., 2008). Each were backcrossed to EMS treated Col-0 and Ct-1 to produce F1 plants. F1 plants were crossed as female or male to each other to produce F2 plants, which were sequenced. Refer to Figure 1 of Madec et al, 2026 for more information. In this specific population IV, the F2 plants sequenced come from a cross between an F1 7RV168xCt-EMS as female and an F1 7RV168xCol-EMS as male. Other populations can be found linked to this submission

2026-08-31 | E-MTAB-17029 | biostudies-arrayexpress

gDNA sequencing for population III from Madec et al, 2026 (progeny from 7RV168xCol-EMS F1 crossed with 7RV168xCt-EMS)

Project description:This experiment aims at analyzing crossover distribution genome-wide in the plant Arabidopis thaliana in response to varying patterns of polymorphism across all five chromosomes. In the publication (Madec et al, 2026), two different Recombinant Inbred Lines were used : 7RV168 and 7RV498, from a Columbia-0xCatania-1 (Col-0xCt-1) population (from Simon et al., 2008). Each were backcrossed to EMS treated Col-0 and Ct-1 to produce F1 plants. F1 plants were crossed as female or male to each other to produce F2 plants, which were sequenced. Refer to Figure 1 of Madec et al, 2026 for more information. In this specific population III, the F2 plants sequenced come from a cross between an F1 7RV168xCol-EMS as female and an F1 7RV168xCt-EMS as male. Other populations can be found linked to this submission

2026-08-31 | E-MTAB-17145 | biostudies-arrayexpress

gDNA sequencing for population II from Madec et al, 2026 (progeny from 7RV498xCt-EMS F1 crossed with 7RV498xCol-EMS)

Project description:his experiment aims at analyzing crossover distribution genome-wide in the plant Arabidopis thaliana in response to varying patterns of polymorphism across all five chromosomes. In the publication (Madec et al, 2026), two different Recombinant Inbred Lines were used : 7RV168 and 7RV498, from a Columbia-0xCatania-1 (Col-0xCt-1) population (from Simon et al., 2008). Each were backcrossed to EMS treated Col-0 and Ct-1 to produce F1 plants. F1 plants were crossed as female or male to each other to produce F2 plants, which were sequenced. Refer to Figure 1 of Madec et al, 2026 for more information. In this specific population II, the F2 plants sequenced come from a cross between an F1 7RV168xCt-EMS as female and an F1 7RV168xCol-EMS as male. Other populations can be found linked to this submission

2026-08-31 | E-MTAB-17024 | biostudies-arrayexpress

gDNA sequencing for population VII from Madec et al, 2026 (progeny from Col-0 crossed with an F1 7RV168xCol-EMS)

Project description:This experiment aims at analyzing crossover distribution genome-wide in the plant Arabidopis thaliana in response to varying patterns of polymorphism across all five chromosomes. In the publication (Madec et al, 2026), two different Recombinant Inbred Lines were used : 7RV168 and 7RV498, from a Columbia-0xCatania-1 (Col-0xCt-1) population (from Simon et al., 2008). Each were backcrossed to EMS treated Col-0 and Ct-1 to produce F1 plants. F1 plants were crossed as female or male to each other to produce F2 plants, which were sequenced. Refer to Figure 1 of Madec et al, 2026 for more information. In this specific population VII, the F2 plants sequenced come from a cross between an Columbia-0 as female and an F1 7RV168xCol-EMS as male. Other populations can be found linked to this submission

2026-08-31 | E-MTAB-17458 | biostudies-arrayexpress

gDNA sequencing for population V from Madec et al, 2026 (progeny from Col crossed with 7RV498xCol-EMS)

Project description:This experiment aims at analyzing crossover distribution genome-wide in the plant Arabidopis thaliana in response to varying patterns of polymorphism across all five chromosomes. In the publication (Madec et al, 2026), two different Recombinant Inbred Lines were used : 7RV168 and 7RV498, from a Columbia-0xCatania-1 (Col-0xCt-1) population (from Simon et al., 2008). Each were backcrossed to EMS treated Col-0 and Ct-1 to produce F1 plants. F1 plants were crossed as female or male to each other to produce F2 plants, which were sequenced. Refer to Figure 1 of Madec et al, 2026 for more information. In this specific population V, the plants sequenced come from a backcross between a Col plant as female and an F1 7RV498xCol-EMS as male. Other populations can be found linked to this submission.

2026-08-31 | E-MTAB-17166 | biostudies-arrayexpress

gDNA sequencing for population I from Madec et al, 2026 (progeny from 7RV498xCol-EMS F1 crossed with 7RV498xCt-EMS)

Project description:This experiment aims at analyzing crossover distribution genome-wide in the plant Arabidopis thaliana in response to varying patterns of polymorphism across all five chromosomes. In the publication (Madec et al, 2026), two different Recombinant Inbred Lines were used : 7RV168 and 7RV498, from a Columbia-0xCatania-1 (Col-0xCt-1) population (from Simon et al., 2008). Each were backcrossed to EMS treated Col-0 and Ct-1 to produce F1 plants. F1 plants were crossed as female or male to each other to produce F2 plants, which were sequenced. Refer to Figure 1 of Madec et al, 2026 for more information. In this specific population I, the F2 plants sequenced come from a cross between an F1 7RV498xCol as female and an F1 7RV498xCt as male. Other populations can be found linked to this submission.

2026-07-31 | E-MTAB-16988 | biostudies-arrayexpress

gDNA sequencing for population VI from Madec et al, 2026 (progeny from Col crossed with 7RV498xCt-EMS)

Project description:his experiment aims at analyzing crossover distribution genome-wide in the plant Arabidopis thaliana in response to varying patterns of polymorphism across all five chromosomes. In the publication (Madec et al, 2026), two different Recombinant Inbred Lines were used : 7RV168 and 7RV498, from a Columbia-0xCatania-1 (Col-0xCt-1) population (from Simon et al., 2008). Each were backcrossed to EMS treated Col-0 and Ct-1 to produce F1 plants. F1 plants were crossed as female or male to each other to produce F2 plants, which were sequenced. Refer to Figure 1 of Madec et al, 2026 for more information. In this specific population V, the F2 plants sequenced come from a cross between an Col-0 plant as female and an F1 7RV168xCt as male. Other populations can be found linked to this submission

2026-08-31 | E-MTAB-17454 | biostudies-arrayexpress