Multi-tissue RNA-seq from 6 salmonids and 6 non-salmonid teleost fishes

ABSTRACT: The REWIRED study investigates the evolution of gene expression after the salmonid-specific whole-genome duplication. Strand-specific mRNA sequencing was performed across six salmonid (Hucho hucho, Thymallus thymallus, Oncorhynchus kisutch, Oncorhynchus mykiss, Salvelinus alpinus and Salmo salar) and six non-salmonid teleost fish species (Danio rerio, Gasterosteus aculeatus, Oryzias latipes, Novumbra hubbsi, Esox lucius and Umbra pygmaea), comparing brain, liver, gill and spleen from male and female fish. Additional tissues comprise muscle from Esox lucius and Salmo salar, and heart, skin and male gonad from Salmo salar. The dataset contains 205 sample records, represented by 287 paired-end sequencing runs (574 FASTQ files). Libraries were prepared using the Illumina TruSeq Stranded mRNA

INSTRUMENT(S): Illumina NovaSeq 6000

ORGANISM(S): Esox lucius

SUBMITTER: Lars Grønvold 

PROVIDER: E-MTAB-17634 | biostudies-arrayexpress |

REPOSITORIES: biostudies-arrayexpress