Metabolomics,Unknown,Transcriptomics,Genomics,Proteomics

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Transcription profiling by array of human embryonic stem cells differentiated towards an endodermal fate compared to clones subjected to EOMES knockdown via shRNA


ABSTRACT: Transcriptional profiling of hESCs differentiated towards an endodermal fate in chemically-defined media (3 days) compared to clones subjected to EOMES knockdown (via shRNA) under the same conditions.

ORGANISM(S): Homo sapiens

SUBMITTER: Matthew Trotter 

PROVIDER: E-MTAB-351 | biostudies-arrayexpress |

REPOSITORIES: biostudies-arrayexpress

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Publications

Pluripotency factors regulate definitive endoderm specification through eomesodermin.

Teo Adrian Kee Keong AK   Arnold Sebastian J SJ   Trotter Matthew W B MW   Brown Stephanie S   Ang Lay Teng LT   Chng Zhenzhi Z   Robertson Elizabeth J EJ   Dunn N Ray NR   Vallier Ludovic L  

Genes & development 20110118 3


Understanding the molecular mechanisms controlling early cell fate decisions in mammals is a major objective toward the development of robust methods for the differentiation of human pluripotent stem cells into clinically relevant cell types. Here, we used human embryonic stem cells and mouse epiblast stem cells to study specification of definitive endoderm in vitro. Using a combination of whole-genome expression and chromatin immunoprecipitation (ChIP) deep sequencing (ChIP-seq) analyses, we es  ...[more]

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