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Metabolomics,Unknown,Transcriptomics,Genomics,Proteomics

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Arabidopsis thalianaTranscriptome or Gene expression

ABSTRACT: To analyze global changes in AS under salt stress, we obtained high-coverage (~200 times) RNA sequencing data from Arabidopsis thaliana seedlings that were treated with different concentrations of NaCl. Our study provided a comprehensive view of AS under salt stress and revealed novel insights into the potential roles of AS in plant response to salt stress.

INSTRUMENT(S): Illumina HiSeq 2000

ORGANISM(S): Arabidopsis thaliana

SUBMITTER: Feng Ding

PROVIDER: E-MTAB-4286 | biostudies-arrayexpress |

REPOSITORIES: biostudies-arrayexpress

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Genome-wide analysis of alternative splicing of pre-mRNA under salt stress in Arabidopsis.

Ding Feng F Cui Peng P Wang Zhenyu Z Zhang Shoudong S Ali Shahjahan S Xiong Liming L

BMC genomics 20140604

<h4>Background</h4>Alternative splicing (AS) of precursor mRNA (pre-mRNA) is an important gene regulation process that potentially regulates many physiological processes in plants, including the response to abiotic stresses such as salt stress.<h4>Results</h4>To analyze global changes in AS under salt stress, we obtained high-coverage (~200 times) RNA sequencing data from Arabidopsis thaliana seedlings that were treated with different concentrations of NaCl. We detected that ~49% of all intron-c ...[more]

PMID: 24897929

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