Metabolomics,Unknown,Transcriptomics,Genomics,Proteomics

Dataset Information

0

Mapping Gene Activity of Arabidopsis Root Hairs


ABSTRACT: We provide an atlas of gene and protein expression in Arabidopsis root hair cells, generated by paired-end RNA-seq and LC/MS-MS analysis from protoplasts that carry the root hair-specific pEXP7-GFP reporter construct. In total, transcripts from 23,234 genes were detected in root hairs; those related to cell wall biosynthesis and translation differed most dramatically in abundance when compared to non-GFP root protoplasts.

INSTRUMENT(S): Illumina Genome Analyzer II

ORGANISM(S): Arabidopsis thaliana

SUBMITTER: Ping Lan 

PROVIDER: E-MTAB-4375 | biostudies-arrayexpress |

REPOSITORIES: biostudies-arrayexpress

altmetric image

Publications

Mapping gene activity of Arabidopsis root hairs.

Lan Ping P   Li Wenfeng W   Lin Wen-Dar WD   Santi Simonetta S   Schmidt Wolfgang W  

Genome biology 20130625 6


<h4>Background</h4>Quantitative information on gene activity at single cell-type resolution is essential for the understanding of how cells work and interact. Root hairs, or trichoblasts, tubular-shaped outgrowths of specialized cells in the epidermis, represent an ideal model for cell fate acquisition and differentiation in plants.<h4>Results</h4>Here, we provide an atlas of gene and protein expression in Arabidopsis root hair cells, generated by paired-end RNA sequencing and LC/MS-MS analysis  ...[more]

Similar Datasets

2024-01-26 | PXD028991 | Pride
2018-03-03 | GSE111350 | GEO
2018-01-30 | GSE109811 | GEO
2020-09-18 | GSE141730 | GEO
2013-05-28 | PXD000195 | Pride
2022-11-21 | E-NASC-54 | biostudies-arrayexpress
2008-06-14 | E-GEOD-6165 | biostudies-arrayexpress
2016-06-01 | E-GEOD-67921 | biostudies-arrayexpress
2012-12-14 | E-GEOD-42899 | biostudies-arrayexpress
2012-12-14 | GSE42899 | GEO