Metabolomics,Unknown,Transcriptomics,Genomics,Proteomics

Dataset Information

0

Gene expression analysis in proximal and distal colons of Lcn2-/- IL10-/- double knock-out mice.


ABSTRACT: Lcn2 is involved in host defense against pathogens, but the function in intestinal mucosal immunity and inflammation remains largely unknown. Genetic ablation of Lcn2 results in early-onset colitis and spontaneous emergence of right-sided colonic tumors in the setting of IL-10 deficiency (Lcn2-/-;IL10-/- mice). To address whether inflammation or other mechanisms drives the site-specific tumor locations gene expression analyses in proximal versus distal colons of Lcn2-/- IL10-/- mice were performed. Differential expression between distal colon versus cecum and proximal colon samples were analyses using Affymetrix MoGene 2.0 ST arrays on formalin-fixed, paraffin-embedded tissue sections of Lcn2-/-; IL10-/-mice.

INSTRUMENT(S): GeneTitan Multi-Channel (MC) Instrument

ORGANISM(S): Mus musculus

SUBMITTER: Herbert Tilg 

PROVIDER: E-MTAB-4583 | biostudies-arrayexpress |

REPOSITORIES: biostudies-arrayexpress

altmetric image

Publications


High mucosal and fecal concentrations of the antimicrobial siderophore-binding peptide Lipocalin-2 (Lcn2) are observed in inflammatory bowel disease. However, Lcn2 function in chronic intestinal inflammation remains unclear. Here, we demonstrate that Lcn2 protects from early-onset colitis and spontaneous emergence of right-sided colonic tumors resulting from IL-10 deficiency. Exacerbated inflammation in Lcn2(-/-)/Il10(-/-) mice is driven by IL-6, which also controls tumorigenesis. Lcn2(-/-)/Il10  ...[more]

Similar Datasets

2013-08-21 | E-GEOD-45818 | biostudies-arrayexpress
2015-07-30 | E-GEOD-71494 | biostudies-arrayexpress
2015-03-01 | E-GEOD-60769 | biostudies-arrayexpress
2016-05-18 | E-GEOD-52650 | biostudies-arrayexpress
2015-07-23 | E-GEOD-71220 | biostudies-arrayexpress
2010-05-15 | E-GEOD-13819 | biostudies-arrayexpress
2008-10-21 | E-GEOD-12028 | biostudies-arrayexpress
2016-06-01 | E-GEOD-82067 | biostudies-arrayexpress
2020-05-28 | E-MTAB-8958 | biostudies-arrayexpress
2019-03-22 | PXD004520 | Pride