Expression profiling of adult mouse brain and liver tissues (RNA-seq)

ABSTRACT: We carried out total RNA sequencing on RNA extracted from 5 brain subregions (cerebellum, cortex, hippocampus, hypothalamus and thalamus) and liver tissues of wild-type mice at 3 months of age. In total, two female and two male mice were used to obtain biological replicates for appropriate statistical analysis. Not only is this dataset used to perform expression analysis between brain subregions and between brain and liver, it is also used in-conjunction with 5hmC-seq methylation profiles that we performed to study the association between 5hmC and gene expression. Stranded RNA-seq library was prepared and sequenced on a HiSeq2500 by single end sequencing with 100 bp read length.

INSTRUMENT(S): Illumina HiSeq 2500

ORGANISM(S): Mus musculus

SUBMITTER: I-Hsuan Lin 

PROVIDER: E-MTAB-5166 | biostudies-arrayexpress |

REPOSITORIES: biostudies-arrayexpress