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Metabolomics,Unknown,Transcriptomics,Genomics,Proteomics

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Single-cell RNA-sequencing of Platynereis dumerilii

ABSTRACT: For unbiased, whole-organism wide cell type profiling, we randomly sampled cells from dissociated Platynereis larvae. To generate the single-cell mRNA-sequencing data, P. dumerilii larvae were dissociated, followed by cell capture, cDNA synthesis and amplification on the C1 Single-Cell Auto Prep IFCs for 5-10 um or 10-17 um cells (Fluidigm). Sequencing libraries were produced using Nexera XT DNA kit (Illumina). In total, we sequenced 596 samples, of which 373 correspond to single, alive cells that passed the quality check criteria. Part of this dataset was previously published (ArrayExpress accession number E-MTAB-2865). Here, we publish additional 383 sequenced cells.

INSTRUMENT(S): C1 Single-Cell Auto Prep System, Fluidigm, Illumina HiSeq 2000

ORGANISM(S): Platynereis dumerilii

SUBMITTER: Kaia Achim

PROVIDER: E-MTAB-5953 | biostudies-arrayexpress |

REPOSITORIES: biostudies-arrayexpress

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Single-cell RNA-sequencing of Platynereis dumerilii larval brain cells

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