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Metabolomics,Unknown,Transcriptomics,Genomics,Proteomics

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Comparative Transcriptome Analysis of Leaf Sheath Blight Response in resistant versus susceptible rice varieties

ABSTRACT: We carried out an RNA-seq based transcriptome study on two rice varieties, Cocodrie (CCDR; rice sheath blight susceptible) and MCR10277 (MCR; rice sheath blight resistant), to profile the time-series wide genome-scale transcriptional differences in response to sheath blight (SB), an infection caused by R. solanii (LR172) . Our approach is cross-referencing differentially expressed genes with significant variants of two phenotypically different varieties to validate known and discover novel variants and to further understand rice's physiological response to SB.

INSTRUMENT(S): Illumina HiSeq 3000

ORGANISM(S): Oryza sativa Japonica Group

SUBMITTER: Noor Al-Bader

PROVIDER: E-MTAB-6402 | biostudies-arrayexpress |

REPOSITORIES: biostudies-arrayexpress

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