RNAi of signal transduction components in HCT116 cells

ABSTRACT: We performed RNAi knockdown experiments on 7 different signal transduction components of the Wnt pathway in HCT116 colon cancer cells and prepared RNA libraries from the poly-adenylated fraction of the RNA. SOLiD sequencing of strand-specific, barcoded transcriptome libraries yielded expression profiles allowing us to extract common pathway signatures and enabeling us to perform susequent nested effects modelling. the resulting pathway models yields new insight in the pathway topology in colon cancer.

INSTRUMENT(S): AB SOLiD System 3.0

ORGANISM(S): Homo sapiens

SUBMITTER: Michael Boutros 

PROVIDER: E-MTAB-651 | biostudies-arrayexpress |

REPOSITORIES: biostudies-arrayexpress