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Metabolomics,Unknown,Transcriptomics,Genomics,Proteomics

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The transcriptional regulator TFB-RF1 activates transcription of a putative ABC transporter in Pyrococcus furiosus

ABSTRACT: Transcription factor B recruiting factor 1 (TFB-RF1; PF1088) is a transcription regulator which activates transcription on archaeal promoters containing weak TFB recognition elements (BRE) by recruiting TFB to the promoter. The mechanism of activation is described in detail, but nothing is known about the biological function of this protein in Pyrococcus furiosus. The protein is located in an operon structure together with the hypothetical gene pf1089 and the expression rates of both proteins are low under standard growth conditions. By introducing an additional copy of tfb-RF1 using a Pyrococcus shuttle vector we could circumvent the lacking expression and perform a ChIP-seq experiment. This revealed an additional binding site of TFB-RF1 in the upstream region of the pf1011/1012 operon, beside the expected target of the pf1089/tfb-RF1 region.

INSTRUMENT(S): Illumina HiSeq 2000

ORGANISM(S): Pyrococcus furiosus

SUBMITTER: Robert Reichelt

PROVIDER: E-MTAB-6618 | biostudies-arrayexpress |

REPOSITORIES: biostudies-arrayexpress

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