Metabolomics,Unknown,Transcriptomics,Genomics,Proteomics

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Survey of RNA viruses present in East African maize with symptoms of maize lethal necrosis.


ABSTRACT: Next-generation sequencing survey of maize plants exhibiting symptoms of maize lethal necrosis, collected from Kenyan and Ethiopian farmers in August 2014. Up to three samples per site were sequenced, and sites were separated by at least 10km. Data contains maize transcriptome and a variety of RNA viruses.

INSTRUMENT(S): Illumina HiSeq 2000

ORGANISM(S): Zea mays

SUBMITTER: Luke Braidwood 

PROVIDER: E-MTAB-7002 | biostudies-arrayexpress |

REPOSITORIES: biostudies-arrayexpress

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Publications

Maize chlorotic mottle virus exhibits low divergence between differentiated regional sub-populations.

Braidwood Luke L   Quito-Avila Diego F DF   Cabanas Darlene D   Bressan Alberto A   Wangai Anne A   Baulcombe David C DC  

Scientific reports 20180119 1


Maize chlorotic mottle virus has been rapidly spreading around the globe over the past decade. The interactions of maize chlorotic mottle virus with Potyviridae viruses causes an aggressive synergistic viral condition - maize lethal necrosis, which can cause total yield loss. Maize production in sub-Saharan Africa, where it is the most important cereal, is threatened by the arrival of maize lethal necrosis. We obtained maize chlorotic mottle virus genome sequences from across East Africa and for  ...[more]

Publication: 1/2

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