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Metabolomics,Unknown,Transcriptomics,Genomics,Proteomics

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ATAC-seq for L3.6pl cells

ABSTRACT: Identification of open chromatin regions in L3.6pl cells by ATAC-seq

INSTRUMENT(S): Illumina HiSeq 2000

ORGANISM(S): Homo sapiens

SUBMITTER: Steven Johnsen

PROVIDER: E-MTAB-7035 | biostudies-arrayexpress |

REPOSITORIES: biostudies-arrayexpress

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Publications

DeltaNp63-dependent super enhancers define molecular identity in pancreatic cancer by an interconnected transcription factor network.

Hamdan Feda H FH Johnsen Steven A SA

Proceedings of the National Academy of Sciences of the United States of America 20181212 52

Molecular subtyping of cancer offers tremendous promise for the optimization of a precision oncology approach to anticancer therapy. Recent advances in pancreatic cancer research uncovered various molecular subtypes with tumors expressing a squamous/basal-like gene expression signature displaying a worse prognosis. Through unbiased epigenome mapping, we identified deltaNp63 as a major driver of a gene signature in pancreatic cancer cell lines, which we report to faithfully represent the highly a ...[more]

PMID: 30541891

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