Metabolomics,Unknown,Transcriptomics,Genomics,Proteomics

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Pseudo-albino or pigmented Solea senegalensis (Senegalese sole) anterior gut and dorsal skin transcriptomes (RNA-seq), raw sequence reads


ABSTRACT: Pseudo-albinism is a complex condition, caused by a multitude of factors and negatively affecting flatfish aquaculture. The majority of studies have targeted genes involved in pigmentation, the most notable change in these animals. In this study, a global transcriptome approach was taken to understand the underlying basis of Senegalese sole pseudo-albinism, using as targets two important innate immune barriers, the skin and intestine. RNA-seq transcriptome analysis identified 573 differentially expressed transcripts (DETs) between pseudo-albino and pigmented soles in the skin and/or the gut. DETs were mainly linked to pigment production, skin structure and regeneration, mucus production and smooth muscle contraction.

INSTRUMENT(S): NextSeq 500

ORGANISM(S): Solea senegalensis

SUBMITTER: Patricia Pinto 

PROVIDER: E-MTAB-7434 | biostudies-arrayexpress |

REPOSITORIES: biostudies-arrayexpress

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