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Metabolomics,Unknown,Transcriptomics,Genomics,Proteomics

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ChIP-seq of histone H3 and H3K9me2 in WT and dbl2 mutant fission yeast

ABSTRACT: The aim was to compare the levels of histone H3 dimethylation at lysine 9 (H3K9me2) in wild-type and dbl2 knock-out Schizosaccharomyces pombe cells. Fission yeast cultures were grown in the complex YES medium to exponential phase and chromatin immunoprecipitation was carried out using anti-H3 and anti-H3K9me2 antibodies. Two independent biological replicates were performed. The resulting IP and input DNA samples were sequenced using Illumina sequencing (35 nt PE). H3K9me2 occupancy in each sample was normalized to the corresponding total H3 occupancy, and normalized H3K9me2 levels were compared between WT and dbl2 knock-out.

INSTRUMENT(S): NextSeq 500

ORGANISM(S): Schizosaccharomyces pombe

SUBMITTER: Silvia Bágeľová Poláková

PROVIDER: E-MTAB-9619 | biostudies-arrayexpress |

REPOSITORIES: biostudies-arrayexpress

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Repression of a large number of genes requires interplay between homologous recombination and HIRA.

Misova Ivana I Pitelova Alexandra A Budis Jaroslav J Gazdarica Juraj J Sedlackova Tatiana T Jordakova Anna A Benko Zsigmond Z Smondrkova Maria M Mayerova Nina N Pichlerova Karoline K Strieskova Lucia L Prevorovsky Martin M Gregan Juraj J Cipak Lubos L Szemes Tomas T Polakova Silvia Bagelova SB

Nucleic acids research 20210201 4

During homologous recombination, Dbl2 protein is required for localisation of Fbh1, an F-box helicase that efficiently dismantles Rad51-DNA filaments. RNA-seq analysis of dbl2Δ transcriptome showed that the dbl2 deletion results in upregulation of more than 500 loci in Schizosaccharomyces pombe. Compared with the loci with no change in expression, the misregulated loci in dbl2Δ are closer to long terminal and long tandem repeats. Furthermore, the misregulated loci overlap with antisense transcri ...[more]

PMID: 33511417

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