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Metabolomics,Unknown,Transcriptomics,Genomics,Proteomics

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Transcription profiling by array of human and Arabidopsis cells to develop a pipeline for data processing of Agilent oligonucleotide expression arrays

ABSTRACT: From analysis of error and reproducibility to a pipeline for data processing of Agilent oligonucleotide expression arrays.

ORGANISM(S): Arabidopsis thaliana

DISEASE(S): acute myelomonocytic leukaemia

SUBMITTER: Mahdad Noursadeghi

PROVIDER: E-TABM-942 | biostudies-arrayexpress |

REPOSITORIES: biostudies-arrayexpress

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Error, reproducibility and sensitivity: a pipeline for data processing of Agilent oligonucleotide expression arrays.

Chain Benjamin B Bowen Helen H Hammond John J Posch Wilfried W Rasaiyaah Jane J Tsang Jhen J Noursadeghi Mahdad M

BMC bioinformatics 20100624

<h4>Background</h4>Expression microarrays are increasingly used to obtain large scale transcriptomic information on a wide range of biological samples. Nevertheless, there is still much debate on the best ways to process data, to design experiments and analyse the output. Furthermore, many of the more sophisticated mathematical approaches to data analysis in the literature remain inaccessible to much of the biological research community. In this study we examine ways of extracting and analysing ...[more]

PMID: 20576120

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