Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Complete Genome Sequences of Ralstonia solanacearum Strains Isolated from Infected Ginger Plants.

ABSTRACT: We present the complete genome sequences of Ralstonia solanacearum strains isolated from ginger plants. Strains MAFF 211471, MAFF 211479, MAFF 211491, MAFF 301560, MAFF 241647, and MAFF 241648 contain 69, 64, 65, 69, 72, and 64 type III effector genes, respectively.

SUBMITTER: Hasan M

PROVIDER: S-EPMC10019189 | biostudies-literature | 2023 Mar

REPOSITORIES: biostudies-literature

ACCESS DATA

Json Xml

Publications

Complete Genome Sequences of Ralstonia solanacearum Strains Isolated from Infected Ginger Plants.

Hasan Mehbub M Satoh Miho M Kiba Akinori A Hikichi Yasufumi Y Ohnishi Kouhei K

Microbiology resource announcements 20230227 3

We present the complete genome sequences of Ralstonia solanacearum strains isolated from ginger plants. Strains MAFF 211471, MAFF 211479, MAFF 211491, MAFF 301560, MAFF 241647, and MAFF 241648 contain 69, 64, 65, 69, 72, and 64 type III effector genes, respectively. ...[more]

PMID: 36847548

Similar Datasets

Complete Genome Sequences of Ralstonia solanacearum Strains Isolated from Zingiberaceae Plants in Japan.

Project description:Here, we report the complete genome sequences of three Ralstonia solanacearum strains isolated from Zingiberaceae plants in Japan. The total genome sizes of these strains ranged from 5.87 to 6.05?Mb. Strains MAFF 211472, MAFF 211479, and MAFF 311693 each carried one chromosome and one megaplasmid. MAFF 311693 contained an additional 71.9-kb plasmid.

| S-EPMC7844074 | biostudies-literature

Draft Genome Sequences of Nine Strains of Ralstonia solanacearum Differing in Virulence to Eggplant (Solanum melongena).

Project description:Ralstonia solanacearum displays variability in its virulence to solanaceous crops. We report here the draft genome sequences of eight phylotype I strains and one phylotype III strain differing in virulence to the resistant eggplant genotype AG91-25. These data will allow the identification of virulence- and avirulence-related genes.

| S-EPMC4732325 | biostudies-literature

Whole-Genome Sequences of Ralstonia solanacearum Strains P816, P822, and P824, Emerging Pathogens of Blueberry in Florida.

Project description:Ralstonia solanacearum is the causal agent of bacterial wilt in numerous species of plants. Here, we report the whole-genome sequence of three phylogenetically diverse R. solanacearum strains, P816, P822, and P824, reported for the first time as causal agents of an emerging blueberry disease in Florida.

| S-EPMC6346153 | biostudies-literature

Complete Genome Sequences of the Endophytic Streptomyces Strains EN16, EN23, and EN27, Isolated from Wheat Plants.

Project description:The complete genome sequences of three endophytic Streptomyces species were compared. Strains EN16, EN23, and EN27 were isolated from surface-sterilized roots of wheat plants from South Australia. In field trials, these strains are effective in suppressing fungal root diseases of wheat when added as spore coatings to wheat seed.

| S-EPMC5146437 | biostudies-literature

Complete Genome Sequences of the Endophytic Streptomyces sp. Strains LUP30 and LUP47B, Isolated from Lucerne Plants.

Project description:The complete genome sequences of two endophytic Streptomyces sp. strains, LUP30 and LUP47B, were analyzed. These strains were isolated from surface-sterilized roots of lucerne plants from South Australia and were found to promote the growth of the rhizobial partner in vitro and significantly increased nodulation and nitrogen fixation in lucerne plants.

| S-EPMC5473282 | biostudies-literature

Complete genome sequence of the potato pathogen Ralstonia solanacearum UY031.

Project description:Ralstonia solanacearum is the causative agent of bacterial wilt of potato. Ralstonia solanacearum strain UY031 belongs to the American phylotype IIB, sequevar 1, also classified as race 3 biovar 2. Here we report the completely sequenced genome of this strain, the first complete genome for phylotype IIB, sequevar 1, and the fourth for the R. solanacearum species complex. In addition to standard genome annotation, we have carried out a curated annotation of type III effector genes, an important pathogenicity-related class of genes for this organism. We identified 60 effector genes, and observed that this effector repertoire is distinct when compared to those from other phylotype IIB strains. Eleven of the effectors appear to be nonfunctional due to disruptive mutations. We also report a methylome analysis of this genome, the first for a R. solanacearum strain. This analysis helped us note the presence of a toxin gene within a region of probable phage origin, raising the hypothesis that this gene may play a role in this strain's virulence.

| S-EPMC4714475 | biostudies-literature

Near-Complete Genome Sequence of Ralstonia solanacearum T523, a Phylotype I Tomato Phytopathogen Isolated from the Philippines.

Project description:Ralstonia solanacearum strain T523 is the major phytopathogen causing tomato bacterial wilt in the Philippines. Here, we report the complete chromosome and draft megaplasmid genomes with predicted gene inventories supporting rhizosphere processes, extensive plant virulence effectors, and the production of bioactive signaling metabolites, such as ralstonin, micacocidin, and homoserine lactone.

| S-EPMC6256700 | biostudies-literature

Complete Genome Sequences of Endophytic Bacilli Isolated from Grapevine Plants.

Project description:The endophytic strains Bacillus amyloliquefaciens V417 and V167 were isolated from cultured grape plants. We sequenced the complete genomes of these strains to reveal their potential beneficial properties for plant growth promotion and control of fungal pathogens. Genes responsible for the synthesis of antimicrobial compounds and siderophores were identified.

| S-EPMC6883112 | biostudies-literature

Complete Genome Sequences of Four Brucella Strains Isolated from China.

Project description:Brucella spp. are facultative intracellular pathogens that cause a contagious zoonotic disease. Twelve different species are currently identified. This study presents the complete genome sequences of four Brucella strains. These complete genomes were annotated and the contents compared to those of other strains isolated from China.

| S-EPMC5637493 | biostudies-literature

Complete genome sequence of the plant pathogen Ralstonia solanacearum strain Po82.

Project description:Ralstonia solanacearum strain Po82, a phylotype IIB/sequevar 4 strain, was found to be pathogenic to both solanaceous plants and banana. Here, we report the complete genome sequence of Po82 and its comparison with seven published R. solanacearum genomes.

| S-EPMC3147697 | biostudies-literature

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data