Open-source MR imaging and reconstruction workflow.

ABSTRACT:

Purpose

This work presents an end-to-end open-source MR imaging workflow. It is highly flexible in rapid prototyping across the whole imaging process and integrates vendor-independent openly available tools. The whole workflow can be shared and executed on different MR platforms. It is also integrated in the JEMRIS simulation framework, which makes it possible to generate simulated data from the same sequence that runs on the MRI scanner using the same pipeline for image reconstruction.

Methods

MRI sequences can be designed in Python or JEMRIS using the Pulseq framework, allowing simplified integration of new sequence design tools. During the sequence design process, acquisition metadata required for reconstruction is stored in the MR raw data format. Data acquisition is pos

SUBMITTER: Veldmann M 

PROVIDER: S-EPMC10054460 | biostudies-literature | 2022 Dec

REPOSITORIES: biostudies-literature