Prediction and curation of missing biomedical identifier mappings with Biomappings.

ABSTRACT:

Motivation

Biomedical identifier resources (such as ontologies, taxonomies, and controlled vocabularies) commonly overlap in scope and contain equivalent entries under different identifiers. Maintaining mappings between these entries is crucial for interoperability and the integration of data and knowledge. However, there are substantial gaps in available mappings motivating their semi-automated curation.

Results

Biomappings implements a curation workflow for missing mappings which combines automated prediction with human-in-the-loop curation. It supports multiple prediction approaches and provides a web-based user interface for reviewing predicted mappings for correctness, combined with automated consistency checking. Predicted and curated mappings are made available in pub

SUBMITTER: Hoyt CT 

PROVIDER: S-EPMC10076045 | biostudies-literature | 2023 Apr

REPOSITORIES: biostudies-literature