GenoVi, an open-source automated circular genome visualizer for bacteria and archaea.

ABSTRACT: The increase in microbial sequenced genomes from pure cultures and metagenomic samples reflects the current attainability of whole-genome and shotgun sequencing methods. However, software for genome visualization still lacks automation, integration of different analyses, and customizable options for non-experienced users. In this study, we introduce GenoVi, a Python command-line tool able to create custom circular genome representations for the analysis and visualization of microbial genomes and sequence elements. It is designed to work with complete or draft genomes, featuring customizable options including 25 different built-in color palettes (including 5 color-blind safe palettes), text formatting options, and automatic scaling for complete genomes or sequence elements with more than on

SUBMITTER: Cumsille A 

PROVIDER: S-EPMC10104344 | biostudies-literature | 2023 Apr

REPOSITORIES: biostudies-literature