PlaASDB: a comprehensive database of plant alternative splicing events in response to stress.

ABSTRACT:

Background

Alternative splicing (AS) is a co-transcriptional regulatory mechanism of plants in response to environmental stress. However, the role of AS in biotic and abiotic stress responses remains largely unknown. To speed up our understanding of plant AS patterns under different stress responses, development of informative and comprehensive plant AS databases is highly demanded.

Description

In this study, we first collected 3,255 RNA-seq data under biotic and abiotic stresses from two important model plants (Arabidopsis and rice). Then, we conducted AS event detection and gene expression analysis, and established a user-friendly plant AS database termed PlaASDB. By using representative samples from this highly integrated database resource, we compared AS patterns between

SUBMITTER: Guo X 

PROVIDER: S-EPMC10134664 | biostudies-literature | 2023 Apr

REPOSITORIES: biostudies-literature