STAGEs: A web-based tool that integrates data visualization and pathway enrichment analysis for gene expression studies.

ABSTRACT: Gene expression profiling has helped tremendously in the understanding of biological processes and diseases. However, interpreting processed data to gain insights into biological mechanisms remain challenging, especially to the non-bioinformaticians, as many of these data visualization and pathway analysis tools require extensive data formatting. To circumvent these challenges, we developed STAGEs (Static and Temporal Analysis of Gene Expression studies) that provides an interactive visualisation of omics analysis outputs. Users can directly upload data created from Excel spreadsheets and use STAGEs to render volcano plots, differentially expressed genes stacked bar charts, pathway enrichment analysis by Enrichr and Gene Set Enrichment Analysis (GSEA) against established pathway databases

SUBMITTER: Koh CWT 

PROVIDER: S-EPMC10153041 | biostudies-literature | 2023 May

REPOSITORIES: biostudies-literature