TRviz: a Python library for decomposing and visualizing tandem repeat sequences.

ABSTRACT:

Summary

TRviz is an open-source Python library for decomposing, encoding, aligning and visualizing tandem repeat (TR) sequences. TRviz takes a collection of alleles (TR containing sequences) and one or more motifs as input and generates a plot showing the motif composition of the TR sequences.

Availability and implementation

TRviz is an open-source Python library and freely available at https://github.com/Jong-hun-Park/trviz. Detailed documentation is available at https://trviz.readthedocs.io.

Supplementary information

Supplementary data are available at Bioinformatics Advances online.

SUBMITTER: Park J 

PROVIDER: S-EPMC10166586 | biostudies-literature | 2023

REPOSITORIES: biostudies-literature