HipFG: High-throughput harmonization and integration pipeline for functional genomics data.

ABSTRACT: Preparing functional genomic (FG) data with diverse assay types and file formats for integration into analysis workflows that interpret genome-wide association and other studies is a significant and time-consuming challenge. Here we introduce hipFG, an automatically customized pipeline for efficient and scalable normalization of heterogenous FG data collections into standardized, indexed, rapidly searchable analysis-ready datasets while accounting for FG datatypes (e.g., chromatin interactions, genomic intervals, quantitative trait loci).

SUBMITTER: Cifello J 

PROVIDER: S-EPMC10168270 | biostudies-literature | 2023 Apr

REPOSITORIES: biostudies-literature