BUSZ: compressed BUS files.

ABSTRACT:

Summary

We describe a compression scheme for BUS files and an implementation of the algorithm in the BUStools software. Our compression algorithm yields smaller file sizes than gzip, at significantly faster compression and decompression speeds. We evaluated our algorithm on 533 BUS files from scRNA-seq experiments with a total size of 1TB. Our compression is 2.2× faster than the fastest gzip option 35% slower than the fastest zstd option and results in 1.5× smaller files than both methods. This amounts to an 8.3× reduction in the file size, resulting in a compressed size of 122GB for the dataset.

Availability and implementation

A complete description of the format is available at https://github.com/BUStools/BUSZ-format and an implementation at https://github.com/BUStools/bus

SUBMITTER: Einarsson PH 

PROVIDER: S-EPMC10185401 | biostudies-literature | 2023 May

REPOSITORIES: biostudies-literature