GeneHapR: an R package for gene haplotypic statistics and visualization.

ABSTRACT:

Background

Together with application of next-generation sequencing technologies and increased accumulation of genomic variation data in different organism species, an opportunity for effectively identification of superior alleles of functional genes to facilitate marker-assisted selection is emerging, and the clarification of haplotypes of functional genes is becoming an essential target in recent study works.

Results

In this paper, we describe an R package 'geneHapR' developed for haplotypes identification, statistics and visualization analysis of candidate genes. This package could integrate genotype data, genomic annotating information and phenotypic variation data to clarify genotype variations, evolutionary-ship, and morphological effects among haplotypes through varian

SUBMITTER: Zhang R 

PROVIDER: S-EPMC10186671 | biostudies-literature | 2023 May

REPOSITORIES: biostudies-literature