clipplotr-a comparative visualization and analysis tool for CLIP data.

ABSTRACT: CLIP technologies are now widely used to study RNA-protein interactions and many data sets are now publicly available. An important first step in CLIP data exploration is the visual inspection and assessment of processed genomic data on selected genes or regions and performing comparisons: either across conditions within a particular project, or incorporating publicly available data. However, the output files produced by data processing pipelines or preprocessed files available to download from data repositories are often not suitable for direct comparison and usually need further processing. Furthermore, to derive biological insight it is usually necessary to visualize a CLIP signal alongside other data such as annotations, or orthogonal functional genomic data (e.g., RNA-seq). We have de

SUBMITTER: Chakrabarti AM 

PROVIDER: S-EPMC10187674 | biostudies-literature | 2023 Jun

REPOSITORIES: biostudies-literature