NanoPack2: Population scale evaluation of long-read sequencing data.

ABSTRACT:

Summary

Increases in the cohort size in long-read sequencing projects necessitate more efficient software for quality assessment and processing of sequencing data from Oxford Nanopore Technologies and Pacific Biosciences. Here we describe novel tools for summarizing experiments, filtering datasets, visualizing phased alignments results, and updates to the NanoPack software suite.

Availability and implementation

The cramino, chopper, kyber, and phasius tools are written in Rust and available as executable binaries without requiring installation or managing dependencies. Binaries build on musl are available for broad compatibility. NanoPlot and NanoComp are written in Python3. Links to the separate tools and their documentation can be found at https://github.com/wdecoster/nano

SUBMITTER: Wouter C 

PROVIDER: S-EPMC10196664 | biostudies-literature | 2023 May

REPOSITORIES: biostudies-literature